Parallelize by chromosome

FrickTobias / BLR

MIT License

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Parallelize by chromosome #205

Closed marcelm closed 4 years ago

marcelm commented 4 years ago

Nearly every tool after initial read mapping uses only one CPU core. It should be possible to parallelize by splitting the initial mapped BAM by chromosome, run subsequent steps in parallel on the individual chromosomes and then merge the results.

pontushojer commented 4 years ago

Closing as https://github.com/NBISweden/BLR/pull/16 was merged.