Closed pontushojer closed 4 years ago
Updates:
.snakemake
folder from search. This is the current state of this issue. I tested the latest version of BLR on a resent dataset.
[INFO ] multiqc : Run took 3.32 seconds
[INFO ] multiqc : - 0.80s: Searching files
[INFO ] multiqc : - 1.73s: Running modules
[INFO ] multiqc : - 0.20s: Compressing report data
From ~120 s to 3.3s is a huge improvement. With this I will close this issue.
I did a profile of the current runtime using a full dataset, fully processed.
From this searching files takes the longest.
MultiQC also provides a plot of with searches takes up most of the time, see screenshot below.
Multiqc provides this section on runtime optimization: https://multiqc.info/docs/#optimising-run-time