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Fudenberg-Research-Group / akita_utils

utilities for use with Akita
MIT License
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update dataframe splitting in disrupt_genomic_boundary_ctcfs #40

Closed gfudenberg closed 3 months ago

gfudenberg commented 1 year ago

should be changed to a check, b/c @PSmaruj fixed the duplicates in multiGPU runs. https://github.com/Fudenberg-Research-Group/akita_utils/blob/1a68e91d6c4b2a6200c60d29369b4833e56ad40c/akita_utils/utils.py#L126

gfudenberg commented 1 year ago

need to update old disrupt_genomic_boundary_ctcfs code: https://github.com/Fudenberg-Research-Group/akita_utils/blob/892b3decb8c95d8b36c271a9b7340b3d993f5504/bin/disrupt_genomic_boundary_ctcfs/akita_motif_scd.py#L260

to make use of Paulina's updated split_df_equally (e.g. as in https://github.com/Fudenberg-Research-Group/akita_utils/blob/892b3decb8c95d8b36c271a9b7340b3d993f5504/bin/insert_virtual_flanks_experiment/virtual_symmetric_experiment_flanks.py#L291)

gfudenberg commented 1 year ago

also need to update to depend on stats_utils https://github.com/Fudenberg-Research-Group/akita_utils/blob/892b3decb8c95d8b36c271a9b7340b3d993f5504/bin/disrupt_genomic_boundary_ctcfs/akita_motif_scd.py#L435