Closed martin-raden closed 5 years ago
PredictorMfe2dSeedExtensionRiBlast
implementieren./src/bin/IntaRNA -q guuucccc -t gggggcaaac --seedbp=4 --energy=B --tacc=N --qacc=N
add example to docu
./src/bin/IntaRNA -t CCCAUUUCC -q GGGGG --seedTQ="8||&1||" --seedbp=2 --model=X
# vs
./src/bin/IntaRNA -t CCCAUUUCC -q GGGGG --seedTQ="8||&1||" --seedbp=2 --model=X --mode=R
disadvantage: overweighting parallel seed extension advantage: no explicit max-interaction length needed
RIblast stopt interaction prediction, wenn es nicht besser wird = heuristik