Regarding chromatin.py - Githubissues

FunctionLab / ExPecto

predicting expression effects of human genome variants ab initio from sequence

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Regarding chromatin.py #13

Closed Pankaj01998 closed 5 years ago

Pankaj01998 commented 5 years ago

when I was running the python script chromatin.py, I got the following error

Traceback (most recent call last): File "chromatin.py", line 34, in genome = pyfasta.Fasta('./resources/hg19.fa') File "/home/pankaj/.local/lib/python3.5/site-packages/pyfasta/fasta.py", line 67, in init raise FastaNotFound('"' + fasta_name + '"') pyfasta.fasta.FastaNotFound: "./resources/hg19.fa"

I think hg19.fa file is not present in resource folder. Plese help.

jzthree commented 5 years ago

You can download the resources files sh download_resources.sh; tar xf resources.tar.gz as described in the Install section.