search

FunctionLab / selene

a framework for training sequence-level deep learning networks
BSD 3-Clause Clear License
370 stars 88 forks source link

Input files to process_data.sh missing (case 2) #103

Closed ltorada closed 4 years ago

ltorada commented 4 years ago

The selene/manuscript/case2/download_data.sh script downloads the output we would obtain after running selene/manuscript/case2/1_train_with_online_sampler/data/process_data.sh with missing input files (chromatin_profiles/*).

It would be very helpful if you could provide those input files (so that the mentioned process_data.sh script could be executed, reproducing the outputs that you already provide with download_data.sh). This would help to check the required formats for using different datasets.

Many thanks!

kathyxchen commented 4 years ago

Ah, so these are commented out in the download_data script. I have updated process_data.sh to include the data download.

https://github.com/FunctionLab/selene/blob/master/manuscript/case2/1_train_with_online_sampler/data/process_data.sh#L3-L6

kathyxchen commented 4 years ago

@ltorada I updated my comment, hope that helps

ltorada commented 4 years ago

My bad... I didn't spotted that. Thanks!