Error: object ‘getDataByGenes’ is not exported by 'namespace:cBioPortalData'

[bsmith030465]

Hi,

I was trying to install the package in RStudio and get an error (please see below). I have also attached my sessionInfo(). Is there anything else that I should be doing?

thanks!

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install.packages("g3viz") Installing package into ‘/Users/pankajchopra/Library/R/4.0/library’ (as ‘lib’ is unspecified)

There is a binary version available but the source version is later: binary source needs_compilation g3viz 1.1.4 1.1.5 FALSE

installing the source package ‘g3viz’

trying URL 'https://cran.rstudio.com/src/contrib/g3viz_1.1.5.tar.gz' Content type 'application/x-gzip' length 1879204 bytes (1.8 MB)

downloaded 1.8 MB

• installing source package ‘g3viz’ ... package ‘g3viz’ successfully unpacked and MD5 sums checked using staged installation R data * moving datasets to lazyload DB inst ** byte-compile and prepare package for lazy loading Error: object ‘getDataByGenes’ is not exported by 'namespace:cBioPortalData' Execution halted ERROR: lazy loading failed for package ‘g3viz’
• removing ‘/Users/pankajchopra/Library/R/4.0/library/g3viz’
• restoring previous ‘/Users/pankajchopra/Library/R/4.0/library/g3viz’ Warning in install.packages : installation of package ‘g3viz’ had non-zero exit status

The downloaded source packages are in ‘/private/var/folders/wh/g8yjlv2j01xc6xs691xzt34h0000gn/T/RtmpoDQVgp/downloaded_packages’

sessionInfo() R version 4.0.4 (2021-02-15) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS 12.6

Matrix products: default LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] bnlearn_4.8.3 processx_3.8.1 htmltools_0.5.5

loaded via a namespace (and not attached): [1] BiocManager_1.30.20 compiler_4.0.4 fastmap_1.1.1 cli_3.6.1 parallel_4.0.4
[6] tools_4.0.4 rstudioapi_0.14 digest_0.6.31 ps_1.7.5 rlang_1.1.1

[tushardave26]

You need to install cBioPortalData BioConductor Pacakge. Since the last update of the g3viz package, it depends on the cBioPortalData package. Use BiocManager to install the package.