Apparently bcalm crashes with very large k's (4096)

GATB / bcalm

compacted de Bruijn graph construction in low memory

MIT License

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Open rchikhi opened 3 years ago

rchikhi commented 3 years ago

Anton reported that it crashes with:

unexpected problem: repart bucket
unexpected problem: repart bucket
unexpected problem: repart bucket

I'll investigate someday.

rchikhi commented 3 years ago

so I did 2 tests: dmel_chr4.fa k=3000: worked but took 2 hours, 3 GB ram whole human genome, k=3000: killed due to > 200 GB during kmer counting