GTAB HDF5 problem version

[lufuhao]

System ubuntu20 gcc 9.3.0

Problem: running problem

Describe: compiling was successful, but error was reported when running to DSK program

error log

HDF5-DIAG: Error detected in HDF5 (1.10.5) thread 0:

000: /home/hpcsoft/ProdSoft/dsk/v2.3.3-68b79e4/x86_64/thirdparty/gatb-core/gatb-core/thirdparty/hdf5/src/H5A.c line 425 in H5Aopen(): unable to load attribute info from object header for attribute: 'version'

major: Attribute
minor: Can't open object

001: /home/hpcsoft/ProdSoft/dsk/v2.3.3-68b79e4/x86_64/thirdparty/gatb-core/gatb-core/thirdparty/hdf5/src/H5Aint.c line 433 in H5A__open(): unable to load attribute info from object header for attribute: 'version'

major: Attribute
minor: Can't open object

002: /home/hpcsoft/ProdSoft/dsk/v2.3.3-68b79e4/x86_64/thirdparty/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oattribute.c line 515 in H5O__attr_open_by_name(): can't locate attribute: 'version'

major: Attribute
minor: Object not found

HDF5-DIAG: Error detected in HDF5 (1.10.5) thread 0:

000: /home/hpcsoft/ProdSoft/dsk/v2.3.3-68b79e4/x86_64/thirdparty/gatb-core/gatb-core/thirdparty/hdf5/src/H5A.c line 704 in H5Aget_space(): not an attribute

major: Invalid arguments to routine
minor: Inappropriate type

HDF5-DIAG: Error detected in HDF5 (1.10.5) thread 0:

000: /home/hpcsoft/ProdSoft/dsk/v2.3.3-68b79e4/x86_64/thirdparty/gatb-core/gatb-core/thirdparty/hdf5/src/H5S.c line 1013 in H5Sget_simple_extent_dims(): not a dataspace

major: Invalid arguments to routine
minor: Inappropriate type

HDF5-DIAG: Error detected in HDF5 (1.10.5) thread 0:

000: /home/hpcsoft/ProdSoft/dsk/v2.3.3-68b79e4/x86_64/thirdparty/gatb-core/gatb-core/thirdparty/hdf5/src/H5A.c line 662 in H5Aread(): not an attribute

major: Invalid arguments to routine
minor: Inappropriate type

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[rchikhi]

Hi, that is odd. Can you try on the provided binary? https://github.com/GATB/dsk/releases/download/v2.3.3/dsk-v2.3.3-bin-Linux.tar.gz or on another machine to see if you can reproduce the problem.