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GATB / gatb-minia-pipeline

GATB Minia assembly pipeline
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Rustine #11

Closed sletort closed 8 years ago

sletort commented 8 years ago

I kept the function to save intermediate list_reads file. This time bloocoo results are copied into unpaired_reads. I modified bloocoo output, it returns outfile as a list now.

Note : uncorrected files are still in minia entries, don't know if it's wanted.

sletort commented 8 years ago

I added a commit to make Minia uses only bloocoo result is they exist.

rchikhi commented 8 years ago

looks good! I'm merging that pr and testing it after it's been merged :) thanks for finding the bug and proposing the patch