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GATB / gatb-minia-pipeline

GATB Minia assembly pipeline
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gatb-pipeline requires a Linux 64 bits system #14

Closed anmwinter closed 4 years ago

anmwinter commented 6 years ago

Morning,

I am on a Intel Core i& (64bit) Mac running OSX 10.11.6 with Xcode and Anaconda installed. When I run the make test or gatb directly I get the following error: gatb-pipeline requires a Linux 64 bits system

I do have bcalm and bloocoo install individually and they are running fine. I was wondering if there is a work around for this?

Thanks! ara

rchikhi commented 6 years ago

hi ara, you'd need bloocoo and minia compiled on your system, and put the binaries there instead of the linux64 ones. then, just delete those lines in the gatb script:

from sys import platform
if platform == "darwin":
    exit("gatb-pipeline requires a Linux 64 bits system")

There might be other problems down the road, but I'd be happy to assist.

Best, Rayan

anmwinter commented 6 years ago

Rayan,

Thanks! I'll give that a try.

ara