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GATB / gatb-minia-pipeline

GATB Minia assembly pipeline
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OSError: [Errno 17] File exists #32

Closed mergi-2674 closed 1 year ago

mergi-2674 commented 2 years ago

I was running gatb-minia-pipeline on my data set and get this error.

Traceback (most recent call last): File "/home/apps/user_apps/piwczyn/mergi_apps/gatb-minia-pipeline/gatb", line 606, in os.symlink(previous_contigs.rsplit("/", 1)[-1], prefix+"_final.contigs.fa") # create system link in same location as files OSError: [Errno 17] File exists ~
What is the possible error and how to fix it? thanks!

rchikhi commented 1 year ago

Hi, this error is inconsequential, Your results are in [prefix]_final.contigs.fa file .