GATB / minia

Minia is a short-read assembler based on a de Bruijn graph

https://gatb.inria.fr/software/minia

GNU Affero General Public License v3.0

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An error occurred while running #18

Closed fengcong3 closed 4 years ago

fengcong3 commented 5 years ago

But I know why

HDF5-DIAG: Error detected in HDF5 (1.8.18) thread 0:

000: /software/minia-v3.2.1-Source/thirdparty/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dio.c line 173 in H5Dread(): can't read data

major: Dataset
minor: Read failed

001: /software/minia-v3.2.1-Source/thirdparty/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dio.c line 554 in H5D__read(): can't read data

major: Dataset
minor: Read failed

002: /software/minia-v3.2.1-Source/thirdparty/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dchunk.c line 1875 in H5D__chunk_read(): unable to read raw data chunk

major: Low-level I/O
minor: Read failed

003: /software/minia-v3.2.1-Source/thirdparty/gatb-core/gatb-core/thirdparty/hdf5/src/H5Dchunk.c line 2905 in H5D__chunk_lock(): data pipeline read failed

major: Data filters
minor: Filter operation failed

004: /software/minia-v3.2.1-Source/thirdparty/gatb-core/gatb-core/thirdparty/hdf5/src/H5Z.c line 1372 in H5Z_pipeline(): filter returned failure during read

major: Data filters
minor: Read failed

005:/software/minia-v3.2.1-Source/thirdparty/gatb-core/gatb-core/thirdparty/hdf5/src/H5Zdeflate.c line 125 in H5Z_filter_deflate(): inflate() failed

major: Data filters
minor: Unable to initialize object

rchikhi commented 5 years ago

But I know why

Do you know why? :)

xiefumin1 commented 10 months ago

I think i know why, the config may set like this: 1.fq.gz\r\n 2.fq.gz\r\n but it should be like this； 1.fq.gz\n 2.fq.gz\n

rchikhi commented 10 months ago

ah nice, thanks!