GATB / short_read_connector

Short Read Connector (SRC)
GNU Affero General Public License v3.0
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Usage recommandations to filter out reads #8

Open aghozlane opened 2 months ago

aghozlane commented 2 months ago

Hello,

I have 15 technical control samples that I would like to use to filter reads occurring in real samples. Basically I want to remove every reads with a high similarity with this control set of reads.

I initially concatenated all my files into two pairs and attempted to create the rconnector base. However, even with 200G of memory, this step does not pass. Do you have any recommendations ?