GDKO / AvP

Automatic evaluation of HGTs
GNU General Public License v3.0
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Cannot run program AvP - Uniref database in configuration file #4

Closed alexvasilikop closed 1 year ago

alexvasilikop commented 1 year ago

Hello,

I have installed the databases and the programs required but I do not see any executable avp in the conda environment or in the subdirectories of AvP folder. How does then someone start the program (prepare mode)?

In addition the config.yaml file only contains paths to databases nr and swissprot but I have used uniref50. How can I specify this in the config file? Is the nr database necessary to be setup if uniref50 was used?

Thanks

alexvasilikop commented 1 year ago

Sorry concerning the executable it is indeed in the directory.