GELOG / docker-ubuntu-avocado

(Genomics) Dockerfile for running Avocado - http://bdgenomics.org
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avocado-submit crash on startup with insufficient memory #1

Open davidonlaptop opened 9 years ago

davidonlaptop commented 9 years ago

We need to validate that the image is OK to rule out that the problem is only related to missing memory on my old laptop.

Steps to reproduce: 1) Build the image: docker build --rm=true -t avocado . 2) Run the container: docker run --rm=true avocado

Error:

Java HotSpot(TM) 64-Bit Server VM warning: INFO: os::commit_memory(0x00000006fff80000, 2863661056, 0) failed; error='Cannot allocate memory' (errno=12)
#
# There is insufficient memory for the Java Runtime Environment to continue.
# Native memory allocation (malloc) failed to allocate 2863661056 bytes for committing reserved memory.
# An error report file with more information is saved as:
# //hs_err_pid40.log