More plotly plots

[stefsmeets]

Some plots do not have plotly variants.

This issue is a reminder to see which plots still default to matplotlib and update those plotly where possible.

[stefsmeets]

plot name	mpl	plotly	todo
autocorrelation	✓		plotly
bond_length_distribution	✓		plotly
collective_jumps	✓	✓
density		✓
displacement_histogram	✓	✓
displacement_per_atom	✓	✓
displacement_per_element	✓	✓
energy_along_path	✓		plotly
frequency_vs_occurence	✓	✓
jumps_3d	✓	✓
jumps_3d_animation	✓		plotly if easy
jumps_vs_distance	✓	✓
jumps_vs_time	✓	✓
msd_per_element	✓	✓
path_on_grid	✓		plotly
plot_3d		✓
rectilinear	✓		plotly
shape	✓		plotly
vibrational_amplitudes	✓	✓