For PR submission:
What changes are involved in this pull request?
Read in variable synopsis in pull_data_synapse()
Applied data labels to clinical datasets
Is there a GitHub issue corresponding to this pull request? If so, please provide link.
1
Checklist for PR Reviewer
[x] Make sure all updates from master branch are pulled to branch issuing pull request
[x] Confirm package dependencies are installed by running renv::install()
[ ] For bug corrections, check that unit test was added
[x] usethis::use_spell_check() runs with no spelling errors in documentation
[x] R CMD Check runs without errors, warnings, and notes
[x] Document changes from this pull request in NEWS.md file
[x] Run pkgdown::build_site(). Check the R console for errors, and review the rendered website. If there are errors returned, try running pkgdown::build_site(new_process = FALSE) for better error messaging.
[ ] Code coverage is suitable for any new functions/features. Review coverage with covr::report(). Before you run, begin in a fresh R session without any packages loaded and set Sys.setenv(NOT_CRAN="true").
[x] Increment the version number using usethis::use_version(which = "dev")
GitHub actions failing because variable synopsis file for NSCLC v1.1-consortium has columns "VARNAME" instead of "Variable Name" and "DISPLAY NAME" instead of "Field Label"
For PR submission: What changes are involved in this pull request?
1
Checklist for PR Reviewer
renv::install()
usethis::use_spell_check()
runs with no spelling errors in documentationNEWS.md
filepkgdown::build_site()
. Check the R console for errors, and review the rendered website. If there are errors returned, try runningpkgdown::build_site(new_process = FALSE)
for better error messaging.covr::report()
. Before you run, begin in a fresh R session without any packages loaded and setSys.setenv(NOT_CRAN="true")
.usethis::use_version(which = "dev")