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GGFHF / TOA

TOA (Taxonomy-oriented Annotation) establishes workflows geared towards plant species that automate the extraction of information from genomic databases and the annotation of sequences.
GNU General Public License v3.0
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Little bug in ctoa.py #2

Open TheGreatJack opened 3 years ago

TheGreatJack commented 3 years ago

Line 242, variable "trancriptome_dir" is where "transcriptome_file" should, i couldnt create the pipeline config file because of that, i was in console mode.

PD: I dont know if this is the ideal place to report this, is minor but should be corrected i guess. Still testing the software, it could save us a lot of work, thanks.

fernandomoramarquez commented 3 years ago

First, thanks for using TOA and your input.

We have uploaded a new TOA version where "ctoa.py" is modified. Could you please tell us if all is OK now?

All the best, Unai & Fernando

fernandomoramarquez commented 3 years ago

Hi Kun,

TOA is designed to establish functional annotation pipelines geared towards non-model plant species. If your species is an animal, you should think in other functional annotation software as Trinotate.

All the best, Unai & Fernando