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GIS4WRF / gis4wrf

QGIS toolkit 🧰 for pre- and post-processing 🔨, visualizing 🔍, and running simulations 💻 in the Weather Research and Forecasting (WRF) model 🌀
https://gis4wrf.github.io
MIT License
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Run WRF error exit code: 5 le retour #113

Closed jef737 closed 5 years ago

jef737 commented 5 years ago

Hello dmey First of all thanks for your quick answer Following your recommandation i have checked with exactly the same data from the tutorial and i get the same error, then i open a new issue, i'll appreciate if you could help me to solve it

Below the report i got: Command: /home/meteo/gis4wrf/dist/WRF-4.0-nompi/main/wrf.exe Working directory: /home/meteo/gis4wrf/projects/TEST/run_wrf Ntasks in X 1 , ntasks in Y 1

Configuring physics suite 'conus'

     mp_physics:      8      8
     cu_physics:      6      6
  ra_lw_physics:      4      4
  ra_sw_physics:      4      4
 bl_pbl_physics:      2      2

sf_sfclay_physics: 2 2 sf_surface_physics: 2 2

WRF V4.0 MODEL

Parent domain ids,ide,jds,jde 1 31 1 31 ims,ime,jms,jme -4 36 -4 36 ips,ipe,jps,jpe 1 31 1 31

DYNAMICS OPTION: Eulerian Mass Coordinate alloc_space_field: domain 1 , 43878196 bytes allocated med_initialdata_input: calling input_input Input data is acceptable to use: wrfinput_d01 Timing for processing wrfinput file (stream 0) for domain 1: 0.12542 elapsed seconds Max map factor in domain 1 = 1.51. Scale the dt in the model accordingly. INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH" LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15 INITIALIZE THREE Noah LSM RELATED TABLES Skipping over LUTYPE = USGS LANDUSE TYPE = MODIFIED_IGBP_MODIS_NOAH FOUND 20 CATEGORIES INPUT SOIL TEXTURE CLASSIFICATION = STAS SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES ThompMP: computing qr_acr_qg Writing qr_acr_qg.dat in Thompson MP init ThompMP: computing qr_acr_qs Writing qr_acr_qs.dat in Thompson MP init ThompMP: computing freezeH2O Writing freezeH2O.dat in Thompson MP init

Nesting domain ids,ide,jds,jde 1 31 1 31 ims,ime,jms,jme -4 36 -4 36 ips,ipe,jps,jpe 1 31 1 31Exit code: 5 Runtime: 1010 s INTERMEDIATE domain ids,ide,jds,jde 9 24 9 24 ims,ime,jms,jme 4 29 4 29 ips,ipe,jps,jpe 7 26 7 26

d01 2018-07-15_12:00:00 alloc_space_field: domain 2 , 43878196 bytes allocated d01 2018-07-15_12:00:00 Initializing nest domain # 2 from an input file. d01 2018-07-15_12:00:00 med_initialdata_input: calling input_input d01 2018-07-15_12:00:00 Input data is acceptable to use: wrfinput_d02 Timing for processing wrfinput file (stream 0) for domain 2: 0.13322 elapsed seconds INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH" LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15 INITIALIZE THREE Noah LSM RELATED TABLES Skipping over LUTYPE = USGS LANDUSE TYPE = MODIFIED_IGBP_MODIS_NOAH FOUND 20 CATEGORIES INPUT SOIL TEXTURE CLASSIFICATION = STAS SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH" LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15 INITIALIZE THREE Noah LSM RELATED TABLES Skipping over LUTYPE = USGS LANDUSE TYPE = MODIFIED_IGBP_MODIS_NOAH FOUND 20 CATEGORIES INPUT SOIL TEXTURE CLASSIFICATION = STAS SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES Max map factor in domain 1 = 1.51. Scale the dt in the model accordingly. INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH" LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15 INITIALIZE THREE Noah LSM RELATED TABLES Skipping over LUTYPE = USGS LANDUSE TYPE = MODIFIED_IGBP_MODIS_NOAH FOUND 20 CATEGOExit code: 5 Runtime: 1010 sRIES INPUT SOIL TEXTURE CLASSIFICATION = STAS SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES Timing for Writing wrfout_d01_2018-07-15_12_00_00 for domain 1: 0.20327 elapsed seconds d01 2018-07-15_12:00:00 Input data is acceptable to use: wrfbdy_d01 Timing for processing lateral boundary for domain 1: 0.13360 elapsed seconds Tile Strategy is not specified. Assuming 1D-Y WRF TILE 1 IS 1 IE 31 JS 1 JE 31 WRF NUMBER OF TILES = 1 Timing for Writing wrfout_d02_2018-07-15_12_00_00 for domain 2: 0.20862 elapsed seconds Tile Strategy is not specified. Assuming 1D-Y WRF TILE 1 IS 1 IE 31 JS 1 JE 31 WRF NUMBER OF TILES = 1 d02 2018-07-15_12:00:00 9112 points exceeded cfl=2 in domain d02 at time 2018-07-15_12:00:00 hours d02 2018-07-15_12:00:00 MAX AT i,j,k: 2 30 26 vert_cfl,w,d(eta)= 16858164. -39010468. 2.89094970E-02 d02 2018-07-15_12:00:00 101 points exceeded cfl=2 in domain d02 at time 2018-07-15_12:00:00 hours d02 2018-07-15_12:00:00 MAX AT i,j,k: 1 30 26 vert_cfl,w,d(eta)= 3121490.5 -1.00769368E+08 2.89094970E-02 Timing for main: time 2018-07-15_12:01:00 on domain 2: 1.86449 elapsed seconds d02 2018-07-15_12:01:00 101 points exceeded cfl=2 in domain d02 at time 2018-07-15_12:01:00 hours d02 2018-07-15_12:01:00 MAX AT i,j,k: 1 30 26 vert_cfl,w,d(eta)= 6242982.5 -2.01538752E+08 2.89094970E-02 d02 2018-07-15_12:01:00 101 points exceeded cfl=2 in domain d02 at time 2018-07-15_12:01:00 hours d02 2018-07-15_12:01:00 MAX AT i,j,k: 1 30 26 vert_cfl,w,d(eta)= 8323978.0 -2.68718336E+08 2.89094970E-02 d02 2018-07-15_12:01:00 101 points exceeded cfl=2 in domain d02 at time 2018-07-15_12:01:00 hours d02 2018-07-15_12:01:00 MAX AT i,j,k: 1 30 26 vert_cfl,w,d(eta)= 9364474.0 -3.02308128E+08 2.89094970E-02 Timing for main: time 2018-07-15_12:02:00 on domain 2: 0.15355 elapsed seconds d02 2018-07-15_12:02:00 101 points exceeded cfl=2 in domain d02 at time 2018-07-15_12:02:00 hours d02 2018-07-15_12:02:00 MAX AT i,j,k: 1 30 26 vert_cfl,w,d(eta)= 12485962. -4.03077504E+08 2.89094970E-02 d02 2018-07-15_12:02:00 101 points exceeded cfl=2 in domain d02 at time 2018-07-15_12:02:00 hours d02 2018-07-15_12:02:00 MAX AT i,j,k: 1 30 26 vert_cfl,w,d(eta)= 14566968. -4.70257120E+08 2.89094970E-02 d02 2018-07-15_12:02:00 101 points exceeded cfl=2 in domain d02 at time 2018-07-15_12:02:00 hours d02 2018-07-15_12:02:00 MAX AT i,j,k: 1 30 26 vert_cfl,w,d(eta)= 15607460. -5.03846912E+08 2.89094970E-02 Timing for main: time 2018-07-15_12:03:00 on domain 2: 0.15032 elapsed seconds Timing for main: time 2018-07-15_12:03:00 on domain 1: 5.89524 elapsed seconds d01 2018-07-15_12:03:00 23222 points exceeded cfl=2 in domain d01 at time 2018-07-15_12:03:00 hoursExit code: 5 Runtime: 1010 s d01 2018-07-15_12:03:00 MAX AT i,j,k: 23 29 26 vert_cfl,w,d(eta)= 1.83535130E+09 -2.39870812E+10 2.89094970E-02 d01 2018-07-15_12:03:00 25 points exceeded cfl=2 in domain d01 at time 2018-07-15_12:03:00 hours d01 2018-07-15_12:03:00 MAX AT i,j,k: 10 1 10 vert_cfl,w,d(eta)= 60.048180 NaN 3.61302495E-02 d02 2018-07-15_12:03:00 101 points exceeded cfl=2 in domain d02 at time 2018-07-15_12:03:00 hours d02 2018-07-15_12:03:00 MAX AT i,j,k: 1 30 26 vert_cfl,w,d(eExit code: 5 Runtime: 1010 sta)= 18728932. -6.04616256E+08 2.89094970E-02 Timing for main: time 2018-07-15_12:04:00 on domain 2: 0.15016 elapsed seconds Timing for main: time 2018-07-15_12:05:00 on domain 2: 0.15224 elapsed seconds Timing for main: time 2018-07-15_12:06:00 on domain 2: 0.14651 elapsed seconds Timing for main: time 2018-07-15_12:06:00 on domain 1: 0.95273 elapsed seconds

Program received signal 11 (SIGSEGV): Segmentation fault.

Backtrace for this error:

Exit code: 5 Runtime: 1010 s

dmey commented 5 years ago

@jef737, I see that the timestep is not the same as in the tutorial -- could you please check the following: click on open configuration (1) and replace all values in the configuration window (2) with the following below:

image

&time_control
    start_year = 2018, 2018
    start_month = 7, 7
    start_day = 15, 15
    start_hour = 12, 12
    end_year = 2018, 2018
    end_month = 7, 7
    end_day = 15, 15
    end_hour = 18, 18
    interval_seconds = 21600
    input_from_file = .true., .true.
    history_interval = 10, 10
    frames_per_outfile = 100, 100
    restart = .false.
    restart_interval = 7200
    io_form_history = 2
    io_form_restart = 2
    io_form_input = 2
    io_form_boundary = 2
    start_minute = 0, 0
    start_second = 0, 0
    end_minute = 0, 0
    end_second = 0, 0
    nocolons = .true.
/

&domains
    time_step = 40
    time_step_fract_num = 0
    time_step_fract_den = 1
    max_dom = 2
    e_we = 31, 31
    e_sn = 31, 31
    e_vert = 33, 33
    p_top_requested = 5000
    num_metgrid_levels = 32
    num_metgrid_soil_levels = 4
    dx = 9000.0, 3000.0
    dy = 9000.0, 3000.0
    grid_id = 1, 2
    parent_id = 1, 1
    i_parent_start = 1, 11
    j_parent_start = 1, 11
    parent_grid_ratio = 1, 3
    parent_time_step_ratio = 1, 3
    feedback = 1
    smooth_option = 0
/

&physics
    physics_suite = 'CONUS'
    mp_physics = 0, 0
    cu_physics = 0, 0
    radt = 9, 3
    bldt = 0, 0
    cudt = 0, 0
    icloud = 0
    num_land_cat = 21
    sf_urban_physics = 1, 1
/

&dynamics
    hybrid_opt = 2
    w_damping = 0
    diff_opt = 1, 1
    km_opt = 4, 4
    diff_6th_opt = 0, 0, 0
    diff_6th_factor = 0.12, 0.12
    base_temp = 290.0
    damp_opt = 3
    zdamp = 5000.0, 5000.0
    dampcoef = 0.2, 0.2
    khdif = 0, 0
    kvdif = 0, 0
/

&bdy_control
    spec_bdy_width = 5
    specified = .true.
/

&namelist_quilt
/
jef737 commented 5 years ago

Thanks again for your answer. I've checked the namelist.input file, in the time-control paragraph 2 item were different history_interval and frames_per_outfile. The time_step in domains paragraph was wrong, and the following paragraphs physics and dynamics were defined for 3 domains. Then i've changed all the wrong parameters and launch a new run,and got a new error . See the journal extract below: Timing for main: time 2018-07-15_17:49:06 on domain 2: 0.07208 elapsed seconds Timing for main: time 2018-07-15_17:49:20 on domain 2: 0.07196 elapsed seconds Timing for main: time 2018-07-15_17:49:20 on domain 1: 0.49076 elapsed seconds ...... At line 902 of file /root/src/WRF/share/module_date_time.F Fortran runtime error: Bad value during integer read

Backtrace for this error:

Have you any idea about this new error?

dmey commented 5 years ago

It looks like your end time is misconfigured -- In any case just make sure to copy and paste the same namelist I provided (same as in the tutorial) and run real and wrf again. If it errors it's probably because there was something you've done differently from the tutorial so I'd recommend starting the tutorial again in that case. BTW it has finished and written the files so you can view them.

jef737 commented 5 years ago

Hello dmey, Sorry for the last follow-up i was busy with other tasks. I've done a copy and past of the entire namelist provided in the tutorial, and it works fine. But now i can't see any files in the "Visualize Output" button although the files exist in the sub-directory run_wrf. I give all permissions but it doesn't change any thing. What should i do to see it?

dmey commented 5 years ago

Try with Layers > Add Layer > Add WRF NetCDF Layer... -- https://gis4wrf.github.io/documentation/#layer-menu.

jef737 commented 5 years ago

Thanks again for your answer, but as i'm not a qgis expert when i try to add layer WRF netcdf it require me to choose a file, i don't know which file i should select. It seems not be the right solution for my project, then i close this issue and continue to use WRF with NCL