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GIS4WRF / gis4wrf

QGIS toolkit 🧰 for pre- and post-processing 🔨, visualizing 🔍, and running simulations 💻 in the Weather Research and Forecasting (WRF) model 🌀
https://gis4wrf.github.io
MIT License
159 stars 36 forks source link

Could Not install gis4wrf on qgis 3.6 on Ubuntu #115

Closed pskunjeer closed 5 years ago

pskunjeer commented 5 years ago

Couldn't load plugin 'gis4wrf' due to an error when calling its classFactory() method

RuntimeError: GIS4WRF: Error installing Python packages Log: Added /home/emsuser/.local/share/gis4wrf/python36/local/lib/python3.6/dist-packages as module search pathAdded /home/emsuser/.local/share/gis4wrf/python36/lib/python3/dist-packages as module search pathAdded /home/emsuser/.local/share/gis4wrf/python36/lib/python3.6/dist-packages as module search pathPackage directory: /home/emsuser/.local/share/gis4wrf/python36/usr/bin/python3 -m pip install --prefix /home/emsuser/.local/share/gis4wrf/python36 netCDF4==1.2.9ERROR: Can not combine '--user' and '--prefix' as they imply different installation locations Traceback (most recent call last): File "/home/emsuser/.local/share/QGIS/QGIS3/profiles/default/python/plugins/gis4wrf/init.py", line 39, in bootstrap_with_ui for msg_type, msg_val in bootstrap(): File "/home/emsuser/.local/share/QGIS/QGIS3/profiles/default/python/plugins/gis4wrf/bootstrap.py", line 215, in bootstrap for line in run_subprocess(args, LOG_PATH): File "/home/emsuser/.local/share/QGIS/QGIS3/profiles/default/python/plugins/gis4wrf/bootstrap.py", line 244, in run_subprocess raise subprocess.CalledProcessError(process.returncode, args) subprocess.CalledProcessError: Command '['/usr/bin/python3', '-m', 'pip', 'install', '--prefix', '/home/emsuser/.local/share/gis4wrf/python36', 'netCDF4==1.2.9']' returned non-zero exit status 1.

The above exception was the direct cause of the following exception:

Traceback (most recent call last): File "/usr/lib/python3/dist-packages/qgis/utils.py", line 335, in startPlugin plugins[packageName] = package.classFactory(iface) File "/home/emsuser/.local/share/QGIS/QGIS3/profiles/default/python/plugins/gis4wrf/init.py", line 22, in classFactory bootstrap_with_ui(iface) File "/home/emsuser/.local/share/QGIS/QGIS3/profiles/default/python/plugins/gis4wrf/init.py", line 62, in bootstrap_with_ui raise RuntimeError(PLUGIN_NAME + ': Error installing Python packages\nLog:\n' + log) from e RuntimeError: GIS4WRF: Error installing Python packages Log: Added /home/emsuser/.local/share/gis4wrf/python36/local/lib/python3.6/dist-packages as module search pathAdded /home/emsuser/.local/share/gis4wrf/python36/lib/python3/dist-packages as module search pathAdded /home/emsuser/.local/share/gis4wrf/python36/lib/python3.6/dist-packages as module search pathPackage directory: /home/emsuser/.local/share/gis4wrf/python36/usr/bin/python3 -m pip install --prefix /home/emsuser/.local/share/gis4wrf/python36 netCDF4==1.2.9ERROR: Can not combine '--user' and '--prefix' as they imply different installation locations

Python version: 3.6.7 (default, Oct 22 2018, 11:32:17) [GCC 8.2.0] QGIS version: 3.6.0-Noosa Noosa, 5873452

Python Path: /usr/share/qgis/python /home/emsuser/.local/share/QGIS/QGIS3/profiles/default/python /home/emsuser/.local/share/QGIS/QGIS3/profiles/default/python/plugins /usr/share/qgis/python/plugins /usr/lib/python36.zip /usr/lib/python3.6 /usr/lib/python3.6/lib-dynload /home/emsuser/.local/lib/python3.6/site-packages /usr/local/lib/python3.6/dist-packages /usr/lib/python3/dist-packages /home/emsuser/.local/share/QGIS/QGIS3/profiles/default/python /home/emsuser/.local/share/QGIS/QGIS3/profiles/default/python/plugins/SwapVectorDirection /home/emsuser/.local/share/gis4wrf/python36/local/lib/python3.6/dist-packages /home/emsuser/.local/share/gis4wrf/python36/lib/python3/dist-packages /home/emsuser/.local/share/gis4wrf/python36/lib/python3.6/dist-packages /usr/lib/python3/dist-packages/IPython/extensions

dmey commented 5 years ago

The issue is clear from the log:

> python3 -m pip install --prefix /home/emsuser/.local/share/gis4wrf/python36 netCDF4==1.2.9

ERROR: Can not combine '--user' and '--prefix' as they imply different installation locations

What OS are you using? Next time please use the template.

pskunjeer commented 5 years ago

Sorry for not mentioning the OS. The OS is Ubuntu 18.04

On Fri, Mar 8, 2019, 6:05 PM dmey <notifications@github.com wrote:

The issue is clear from the log:

python3 -m pip install --prefix /home/emsuser/.local/share/gis4wrf/python36 netCDF4==1.2.9

ERROR: Can not combine '--user' and '--prefix' as they imply different installation locations

What OS are you using? Next time please use the template.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/GIS4WRF/gis4wrf/issues/115#issuecomment-470913687, or mute the thread https://github.com/notifications/unsubscribe-auth/AMuClI5yMY_eSRakxXCTCbzP7g7lIoEuks5vUlkDgaJpZM4blQFF .

dmey commented 5 years ago

Did you follow the instructuons at https://gis4wrf.github.io/installation/#18x-bionic exactly as they are? Specifically, have you done:

pip3 install --user f90nml pyyaml netCDF4 wrf-python
pskunjeer commented 5 years ago

(base) emsuser@psk:~$ pip3 install --user f90nml pyyaml netCDF4 wrf-python Requirement already satisfied: f90nml in ./.local/lib/python3.7/site-packages (1.0.2) Requirement already satisfied: pyyaml in ./anaconda3/lib/python3.7/site-packages (3.13) Requirement already satisfied: netCDF4 in ./.local/lib/python3.7/site-packages (1.4.3.1) Requirement already satisfied: wrf-python in ./anaconda3/lib/python3.7/site-packages (1.3.2) Requirement already satisfied: cftime in ./.local/lib/python3.7/site-packages (from netCDF4) (1.0.3.4) Requirement already satisfied: numpy>=1.7 in ./anaconda3/lib/python3.7/site-packages (from netCDF4) (1.16.2) Requirement already satisfied: wrapt in ./anaconda3/lib/python3.7/site-packages (from wrf-python) (1.10.11) Requirement already satisfied: setuptools in ./anaconda3/lib/python3.7/site-packages (from wrf-python) (40.2.0)

All requirements are satisfied but still not able to install the GIS4WRF

letmaik commented 5 years ago

Ah, there's a confusion with Python versions here. Your pip3 from the command line refers to the Anaconda Python 3.7 installation (./anaconda3/lib/python3.7), whereas QGIS uses the system Python 3 from /usr/lib which is Python 3.6. QGIS/gis4wrf would only find packages that are installed for the system Python, not the Anaconda one.

I recommend that you figure out how to get out of your Anaconda setup from the shell and then do a pip3 install again, this time for the system Python. You can figure out which Python you're dealing with by doing which pip3.

Good luck! And yes, it should all be nicer and work automatically, but unfortunately QGIS doesn't provide the necessary infrastructure to make it happen.

pskunjeer commented 5 years ago

I have removed the anaconda and reinstall the qgis

Now I can install the GIS4WRF, but while running the geogrid I get the following error

2019-03-18T22:40:55 WARNING warning:/home/emsuser/.local/share/QGIS/QGIS3/profiles/default/python/plugins/gis4wrf/plugin/ui/thread.py:85: ResourceWarning:

         unclosed file 

         traceback: File "/home/emsuser/.local/share/QGIS/QGIS3/profiles/default/python/plugins/gis4wrf/plugin/ui/thread.py", line 85, in run
          self.use_mpi, self.mpi_processes):
letmaik commented 5 years ago

The error message is incomplete, can you please copy everything?

letmaik commented 5 years ago

Also, closing this as your original issue is resolved. But feel free to keep commenting, or if you think it deserves a separate issue, then please open a new one.