I tried to run geogrid for the tutorial 'The 2018 European heat wave' and getting the following error in program output
Command: mpiexec -n 4 /home/sam/gis4wrf/dist/WPS-4.0-mpi/geogrid.exe
Working directory: /home/sam/gis4wrf/projects/2018_07_15_Amsterdam/run_wps
beignet-opencl-icd: no supported GPU found, this is probably the wrong opencl-icd package for this hardware
(If you have multiple ICDs installed and OpenCL works, you can ignore this message)
Parsed 28 entries in GEOGRID.TBL
Parsed 28 entries in GEOGRID.TBL
Processing domain 1 of 2
Processing domain 1 of 2
Parsed 28 entries in GEOGRID.TBL
Parsed 28 entries in GEOGRID.TBL
Processing domain 1 of 2
Processing XLAT and XLONG
Processing XLAT and XLONG
Processing domain 1 of 2
HDF5-DIAG: Error detected in HDF5 (1.10.4) thread 0:
000: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5F.c line 444 in H5Fcreate(): unable to create file
major: File accessibilty
minor: Unable to open file
001: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5Fint.c line 1364 in H5F__create(): unable to open file
major: File accessibilty
minor: Unable to open file
002: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5Fint.c line 1615 in H5F_open(): unable to lock the file
major: File accessibilty
minor: Unable to open file
003: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5FD.c line 1640 in H5FD_lock(): driver lock request failed
004: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5FDsec2.c line 941 in H5FD_sec2_lock(): unable to lock file, errno = 11, error message = 'Resource temporarily unavailable'
major: File accessibilty
minor: Bad file ID accessed
ERROR: Error in ext_pkg_open_for_write_begin.
application called MPI_Abort(MPI_COMM_WORLD, 39) - process 0
[unset]: write_line error; fd=-1 buf=:cmd=abort exitcode=39
:
system msg for write_line failure : Bad file descriptor
Primary job terminated normally, but 1 process returned
a non-zero exit code.. Per user-direction, the job has been aborted.
Processing XLAT and XLONG
ERROR: Error in ext_pkg_open_for_write_begin.
Processing XLAT and XLONG
HDF5-DIAG: Error detected in HDF5 (1.10.4) thread 0:
000: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5F.c line 444 in H5Fcreate(): unable to create file
major: File accessibilty
minor: Unable to open file
001: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5Fint.c line 1364 in H5F__create(): unable to open file
major: File accessibilty
minor: Unable to open file
002: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5Fint.c line 1615 in H5F_open(): unable to lock the file
major: File accessibilty
minor: Unable to open file
003: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5FD.c line 1640 in H5FD_lock(): driver lock request failed
004: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5FDsec2.c line 941 in H5FD_sec2_lock(): unable to lock file, errno = 11, error message = 'Resource temporarily unavailable'
major: File accessibilty
minor: Bad file ID accessed
application called MPI_Abort(MPI_COMM_WORLD, 39) - process 0
[unset]: write_line error; fd=-1 buf=:cmd=abort exitcode=39
:
system msg for write_line failure : Bad file descriptor
mpiexec detected that one or more processes exited with non-zero status, thus causing
the job to be terminated. The first process to do so was:
I tried to run geogrid for the tutorial 'The 2018 European heat wave' and getting the following error in program output
Command: mpiexec -n 4 /home/sam/gis4wrf/dist/WPS-4.0-mpi/geogrid.exe Working directory: /home/sam/gis4wrf/projects/2018_07_15_Amsterdam/run_wps beignet-opencl-icd: no supported GPU found, this is probably the wrong opencl-icd package for this hardware (If you have multiple ICDs installed and OpenCL works, you can ignore this message) Parsed 28 entries in GEOGRID.TBL Parsed 28 entries in GEOGRID.TBL Processing domain 1 of 2 Processing domain 1 of 2 Parsed 28 entries in GEOGRID.TBL Parsed 28 entries in GEOGRID.TBL Processing domain 1 of 2 Processing XLAT and XLONG Processing XLAT and XLONG Processing domain 1 of 2 HDF5-DIAG: Error detected in HDF5 (1.10.4) thread 0:
000: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5F.c line 444 in H5Fcreate(): unable to create file
001: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5Fint.c line 1364 in H5F__create(): unable to open file
002: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5Fint.c line 1615 in H5F_open(): unable to lock the file
003: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5FD.c line 1640 in H5FD_lock(): driver lock request failed
004: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5FDsec2.c line 941 in H5FD_sec2_lock(): unable to lock file, errno = 11, error message = 'Resource temporarily unavailable'
ERROR: Error in ext_pkg_open_for_write_begin. application called MPI_Abort(MPI_COMM_WORLD, 39) - process 0 [unset]: write_line error; fd=-1 buf=:cmd=abort exitcode=39 : system msg for write_line failure : Bad file descriptor
Primary job terminated normally, but 1 process returned a non-zero exit code.. Per user-direction, the job has been aborted.
Processing XLAT and XLONG ERROR: Error in ext_pkg_open_for_write_begin. Processing XLAT and XLONG HDF5-DIAG: Error detected in HDF5 (1.10.4) thread 0:
000: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5F.c line 444 in H5Fcreate(): unable to create file
001: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5Fint.c line 1364 in H5F__create(): unable to open file
002: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5Fint.c line 1615 in H5F_open(): unable to lock the file
003: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5FD.c line 1640 in H5FD_lock(): driver lock request failed
004: /tmp/CMake-hdf5-1.10.4/hdf5-1.10.4/src/H5FDsec2.c line 941 in H5FD_sec2_lock(): unable to lock file, errno = 11, error message = 'Resource temporarily unavailable'
application called MPI_Abort(MPI_COMM_WORLD, 39) - process 0 [unset]: write_line error; fd=-1 buf=:cmd=abort exitcode=39 : system msg for write_line failure : Bad file descriptor
mpiexec detected that one or more processes exited with non-zero status, thus causing the job to be terminated. The first process to do so was:
Process name: [[6527,1],1] Exit code: 39
Exit code: 39 Runtime: 0 s_
geogrid.log
Same program worked fine when executed on terminal directly
Can anyone tell me what the problem is and how to fix it. Ubuntu 18.04 Qgis 3.12.3