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GIS4WRF / gis4wrf

QGIS toolkit 🧰 for pre- and post-processing 🔨, visualizing 🔍, and running simulations 💻 in the Weather Research and Forecasting (WRF) model 🌀
https://gis4wrf.github.io
MIT License
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Error running tutorial - The 2018 European heat wave #180

Closed leahpope closed 3 years ago

leahpope commented 3 years ago

Describe the bug While running through tutorial, I could not run WRF after running WPS and running real.

GIS4WRF In the part of the tutorial that says : Now you are good to go, run Real and WRF (1). At the end of each program you will receive the following prompt from Real (2) and WRF (3).

Expected behavior I expected it to run without errors

Screenshots Command: C:\Users\Leah.Pope\Documents\gis4wrf\dist\WRF-4.0-nompi\main\wrf.exe Working directory: C:/Users/Leah.Pope/Documents/gis4wrf/projects/20200830\run_wrf Ntasks in X 1 , ntasks in Y 1

Configuring physics suite 'conus'

     mp_physics:      0*     0*
     cu_physics:      0*     0*
  ra_lw_physics:      4      4
  ra_sw_physics:      4      4
 bl_pbl_physics:      2      2

sf_sfclay_physics: 2 2 sf_surface_physics: 2 2

(* = option overrides suite setting)

WRF V4.0 MODEL

Parent domain ids,ide,jds,jde 1 31 1 31 ims,ime,jms,jme -4 36 -4 36 ips,ipe,jps,jpe 1 31 1 31

DYNAMICS OPTION: Eulerian Mass Coordinate alloc_space_field: domain 1 , 62292772 bytes allocated med_initialdata_input: calling input_input Input data is acceptable to use: wrfinput_d01 Timing for processing wrfinput file (stream 0) for domain 1: 0.05882 elapsed seconds Max map factor in domain 1 = 1.51. Scale the dt in the model accordingly. INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH" LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15 INITIALIZE THREE Noah LSM RELATED TABLES Skipping over LUTYPE = USGS LANDUSE TYPE = MODIFIED_IGBP_MODIS_NOAH FOUND 20 CATEGORIES INPUT SOIL TEXTURE CLASSIFICATION = STAS SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES TSURFACE0_URB 303.408569 TDEEP0_URB 281.539825 IVGTYP 1 TR_URB2D 303.408569 TB_URB2D 303.408569 TG_URB2D 303.408569 TC_URB2D 303.408569 QC_URB2D 9.99999978E-03 XXXR_URB2D 0.00000000 SH_URB2D 0.00000000 LH_URB2D 0.00000000 G_URB2D 0.00000000 RN_URB2D 0.00000000 TS_URB2D 303.408569

Program received signal SIGSEGV: Segmentation fault - invalid memory reference.

Backtrace for this error:

0 0xffffffff

1 0xffffffff

2 0xffffffff

3 0xffffffff

4 0xffffffff

5 0xffffffff

6 0xffffffff

7 0xffffffff

8 0xffffffff

9 0xffffffff

10 0xffffffff

11 0xffffffff

12 0xffffffff

13 0xffffffff

14 0xffffffff

15 0xffffffff

16 0xffffffff

17 0xffffffff

18 0xffffffff

19 0xffffffff

20 0xffffffff

21 0xffffffff

22 0xffffffff

23 0xffffffff

24 0xffffffff

Exit code: 3 Runtime: 0 s

System Information (please complete the following information):

Additional Comments In MET datasets, I could not set the subset longitude and latitude from the active layer. I had to manually put in the data

dmey commented 3 years ago

I cannot reproduce the error at my end but from the output you have attached it looks like you are not running the same case as descibed at https://gis4wrf.github.io/tutorials/gis4wrf/simulate-the-2018-european-heat-wave-with-gis4wrf/ -- could you double check this please? With regards to setting the extent, I have not seen this before but I would recommend to upgrade first to the latest version of QGIS (3.14) first

leahpope commented 3 years ago

Hi,

Regarding the tutorial, I am following it step by step. I can show you the same screenshots of the tutorial it shows. Except for the run of WRF and to set to map extent, everything else was running the same. I made a new folder and tried again and got the same error. So that you can see it is the same tutorial I will take the same screenshots as in the tutorial . They are shown below.

[image: image.png] [image: image.png]

[image: image.png] [image: image.png] [image: image.png] [image: image.png] [image: image.png] [image: image.png] [image: image.png] [image: image.png] [image: image.png]

Command: C:\Users\Leah.Pope\Documents\gis4wrf\dist\WRF-4.0-nompi\main\wrf.exe

Working directory: C:/Users/Leah.Pope/Documents/gis4wrf/projects/2018_07_15_Amsterdam\run_wrf

Ntasks in X 1 , ntasks in Y 1

Configuring physics suite 'conus'

mp_physics: 0 0

cu_physics: 0 0

ra_lw_physics: 4 4

ra_sw_physics: 4 4

bl_pbl_physics: 2 2

sf_sfclay_physics: 2 2

sf_surface_physics: 2 2

(* = option overrides suite setting)

WRF V4.0 MODEL

Parent domain

ids,ide,jds,jde 1 31 1 31

ims,ime,jms,jme -4 36 -4 36

ips,ipe,jps,jpe 1 31 1 31

DYNAMICS OPTION: Eulerian Mass Coordinate

alloc_space_field: domain 1 , 62292772 bytes allocated

med_initialdata_input: calling input_input

Input data is acceptable to use: wrfinput_d01

Timing for processing wrfinput file (stream 0) for domain 1: 0.05881 elapsed seconds

Max map factor in domain 1 = 1.51. Scale the dt in the model accordingly.

INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH"

LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15

INITIALIZE THREE Noah LSM RELATED TABLES

Skipping over LUTYPE = USGS

LANDUSE TYPE = MODIFIED_IGBP_MODIS_NOAH FOUND 20 CATEGORIES

INPUT SOIL TEXTURE CLASSIFICATION = STAS

SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES

TSURFACE0_URB 303.408569

TDEEP0_URB 281.539825

IVGTYP 1

TR_URB2D 303.408569

TB_URB2D 303.408569

TG_URB2D 303.408569

TC_URB2D 303.408569

QC_URB2D 9.99999978E-03

XXXR_URB2D 0.00000000

SH_URB2D 0.00000000

LH_URB2D 0.00000000

G_URB2D 0.00000000

RN_URB2D 0.00000000

TS_URB2D 303.408569

Program received signal SIGSEGV: Segmentation fault - invalid memory reference.

Backtrace for this error:

0 0xffffffff

1 0xffffffff

2 0xffffffff

3 0xffffffff

4 0xffffffff

5 0xffffffff

6 0xffffffff

7 0xffffffff

8 0xffffffff

9 0xffffffff

10 0xffffffff

11 0xffffffff

12 0xffffffff

13 0xffffffff

14 0xffffffff

15 0xffffffff

16 0xffffffff

17 0xffffffff

18 0xffffffff

19 0xffffffff

20 0xffffffff

21 0xffffffff

22 0xffffffff

23 0xffffffff

24 0xffffffff

Exit code: 3

Runtime: 0 s

On Sat, Aug 29, 2020 at 12:55 PM dmey notifications@github.com wrote:

I cannot reproduce the error at my end but from the output you have attached it looks like you are not running the same case as descibed at https://gis4wrf.github.io/tutorials/gis4wrf/simulate-the-2018-european-heat-wave-with-gis4wrf/ -- could you double check this please? With regards to setting the extent, I have not seen this before but I would recommend to upgrade first to the latest version of QGIS (3.14) first

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/GIS4WRF/gis4wrf/issues/180#issuecomment-683322630, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO5YTUO2MFO4CRHJC3IETQTSDE6ITANCNFSM4QPDD6MA .

dmey commented 3 years ago

I cannot see those screenshots. Can you zip and attach namelist.input in 2018_07_15_Amsterdam\run_wrf?

leahpope commented 3 years ago

2018_07_15_Amsterdam.zip https://drive.google.com/file/d/1dkcvqz2GChw61oRHr7RJBEdAur6hBRiO/view?usp=drive_web

On Sat, Aug 29, 2020 at 1:31 PM dmey notifications@github.com wrote:

I cannot see those screenshots. Can you zip and attach namelist.input in 2018_07_15_Amsterdam\run_wrf?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/GIS4WRF/gis4wrf/issues/180#issuecomment-683326791, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO5YTUM63VZ4734B22ELUYDSDFCRVANCNFSM4QPDD6MA .

dmey commented 3 years ago

please attach to issue

leahpope commented 3 years ago

I do not understand. I have attached the zipped folder and attached it. I am also attaching the namelist.input file

On Sat, Aug 29, 2020 at 1:37 PM dmey notifications@github.com wrote:

please attach to issue

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/GIS4WRF/gis4wrf/issues/180#issuecomment-683327494, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO5YTUJSESFOUU53C7CTZG3SDFDGXANCNFSM4QPDD6MA .

leahpope commented 3 years ago

image image (1) image (2) image (3) image (4) image (5) image (6) unnamed unnamed (1)

Here are the screenshots

dmey commented 3 years ago

image

leahpope commented 3 years ago

oh. you mean reply in github and not email. Those files are not supported to drag so I will copy-paste below . it is the same one from the tutorial. I'd be happy to share the whole file ( the one with the google link shared earlier ) to an email so that you can see the whole project.

&time_control start_year = 2018, 2018 start_month = 7, 7 start_day = 15, 15 start_hour = 12, 12 end_year = 2018, 2018 end_month = 7, 7 end_day = 15, 15 end_hour = 18, 18 interval_seconds = 21600 input_from_file = .true., .true. history_interval = 10, 10 frames_per_outfile = 100, 100 restart = .false. restart_interval = 7200 io_form_history = 2 io_form_restart = 2 io_form_input = 2 io_form_boundary = 2 start_minute = 0, 0 start_second = 0, 0 end_minute = 0, 0 end_second = 0, 0 nocolons = .true. /

&domains time_step = 40 time_step_fract_num = 0 time_step_fract_den = 1 max_dom = 2 e_we = 31, 31 e_sn = 31, 31 e_vert = 33, 33 p_top_requested = 5000 num_metgrid_levels = 32 num_metgrid_soil_levels = 4 dx = 9000.0, 3000.0 dy = 9000.0, 3000.0 grid_id = 1, 2 parent_id = 1, 1 i_parent_start = 1, 11 j_parent_start = 1, 11 parent_grid_ratio = 1, 3 parent_time_step_ratio = 1, 3 feedback = 1 smooth_option = 0 /

&physics physics_suite = 'CONUS' mp_physics = 0, 0 cu_physics = 0, 0 radt = 9, 3 bldt = 0, 0 cudt = 0, 0 icloud = 0 num_land_cat = 21 sf_urban_physics = 1, 1 /

&dynamics hybrid_opt = 2 w_damping = 0 diff_opt = 1, 1 km_opt = 4, 4 diff_6th_opt = 0, 0, 0 diff_6th_factor = 0.12, 0.12 base_temp = 290.0 damp_opt = 3 zdamp = 5000.0, 5000.0 dampcoef = 0.2, 0.2 khdif = 0, 0 kvdif = 0, 0 /

&bdy_control spec_bdy_width = 5 specified = .true. /

&namelist_quilt /

dmey commented 3 years ago

That's why I suggested to zip it as zip is allowed. OK it looks like there is no difference as you suggested. Could you please zip and attach wrf.exe please? You will find this in gis4wrf\dist\WRF-4.0-nompi\main

leahpope commented 3 years ago

wrf.zip

dmey commented 3 years ago

OK thanks -- I don't see anything strange with that. It may be just easier if you just send me the whole folder. Can you compress and attach 2018_07_15_Amsterdam\run_wrf here -- It should be ~ 30 MB compressed.

leahpope commented 3 years ago

It is 38 MB but GitHub says that my limit is 10 mb.

I have attached it through google: 2018_07_15_Amsterdam.zip https://drive.google.com/file/d/1dkcvqz2GChw61oRHr7RJBEdAur6hBRiO/view?usp=drive_web

dmey commented 3 years ago

Please can you set the share permission to "Anyone" so that I can access it

dmey commented 3 years ago

Just checking if you been able to solve the issue?

dmey commented 3 years ago

Closing due to inactivity.