jzwart commented 2 years ago

This PR has several changes related to ending the use of Travis-CI and starting to use GitHub Actions for package builds and checks as well as resolving some CRAN checks, including:

removing travis-ci.yml and adding GitHub actions yml with package builds across multiple systems
adding a codecov check
adding badges that track codecov, build passing/failure, and CRAN version
changes default branch on GitHub from master to main
removes old extdata that had two versions of mendota data, one with capital M and one with lowercase m. I kept the m data files
updates the release version in preparation for resubmitting to CRAN (currently off CRAN - see https://github.com/GLEON/LakeMetabolizer/issues/147 )
resolving issues with registering native routines and disabling symbol search. To do this I ran tools::package_native_routine_registration_skeleton(".") and copied the full output to src/LakeMetabolizer_init.c. Also updated the NAMESPACE verifying that it has useDynLib(packagename, .registration = TRUE)
changing .c line ending to LF - some platforms need this for compiling
resolving some .Rd file errors

codecov-commenter commented 2 years ago

Codecov Report

:exclamation: No coverage uploaded for pull request base (main@5e42781). Click here to learn what that means. The diff coverage is n/a.

@@          Coverage Diff           @@
##             main    #148   +/-   ##
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  Coverage        ?   1.15%           
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  Files           ?      33           
  Lines           ?    1477           
  Branches        ?       0           
======================================
  Hits            ?      17           
  Misses          ?    1460           
  Partials        ?       0

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jzwart commented 2 years ago

@lawinslow @jordansread @rBatt @hdugan could one of you or a few of you look over these changes? It's successfully building with the GitHub actions checks and also I uploaded the tar file to R-hub and it successfully built there as well ~https://builder.r-hub.io/status/LakeMetabolizer_1.5.5.tar.gz-efda01fb2335941b5d7cf6178eb28cf8~ link expired .

If we're ok with these changes, I can make a new v1.5.5 release after merging and then resubmit to CRAN

jzwart commented 2 years ago

Pinging @lawinslow @jordansread @rBatt @hdugan again.

GLEON / LakeMetabolizer

Using GitHub Actions for CI #148

Codecov Report