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GLOMICON / asvBiomXchange

A repository to develop an exchange format for molecular biodiversity data
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NOAA method for FASTQ to ASV: Tourmaline using QIIME 2 #5

Open cuttlefishh opened 5 years ago

cuttlefishh commented 5 years ago

Our workflow is described here: https://github.com/cuttlefishh/tourmaline

cuttlefishh commented 5 years ago

The goal of sharing ASV tables across projects and organizations is also synergistic with the Earth Microbiome Project (https://github.com/biocore/emp) and the National Microbiome Data Collaborative.

pbuttigieg commented 5 years ago

Thanks @cuttlefishh

We fork the Tourmaline repo into this org.

For this effort, I think we should grab a release or stable version of it and place the code into an EMP or NOAA folder.

Could you do this in a PR?

cuttlefishh commented 4 years ago

Hey @pbuttigieg, happy to do whatever is best. What if I created a NOAA folder and put in it a README.md with a brief description of what Tourmaline does, then point folks to the current/stable release? I could clone the whole repo into the folder, but I'd be concerned it wouldn't stay up-to-date.

cuttlefishh commented 4 years ago

Note: Our workflow should be referred to as the "NOAA-AOML" workflow as NOAA is a huge organization and there are others doing omics with other workflows.

pbuttigieg commented 4 years ago

What if I created a NOAA folder and put in it a README.md with a brief description of what Tourmaline does, then point folks to the current/stable release?

Sounds good! Could you make sure the README is linked to a stable version or release of the workflow?

Note: Our workflow should be referred to as the "NOAA-AOML" workflow as NOAA is a huge organization and there are others doing omics with other workflows.

Got it - would be good to have that in the README too.