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GLYCAM-Web / website

A bare-bones repo to contain public website stuff and issues related to the GLYCAM Web Django apps.
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nginx 504 Gateway Time-out happens for big carbs. #155

Closed gitoliver closed 1 week ago

gitoliver commented 8 months ago

Tool: Any carb builder on test.glycam.org.

Bug Description: I get an nginx 504 Gateway Time-out for carbs with a lot (83 in this example) of residues.

To Reproduce: glycam.org/url/condensed/DAllpa1-4DGlcpa1-4DGlcpa1-4[3DManpa1-3DGalpa1-]<40>OH

Expected behavior It should wait longer/forever for gems to finish building the carb and respond.

Importance Address after Oct 2023 GlycoMIP meeting, but make sure developers are aware of it so can respond to questions about it. The webpage needs to wait indefinitely/longer, and speedups in gmml are ready to be pushed to the test site.

danwentworthart commented 8 months ago

Adding Andrew to the Assignees list, for Nginx guidance.

danwentworthart commented 4 months ago

I see what is happening here. Prioritizing this bug fix for this week. The new pattern of submitting the request via JavaScript instead of Python, on cb Options, has not been implemented in the build Via URL endpoint. This is an easy fix, but will not be available until the next update of test.glycam.org.

gitoliver commented 4 months ago

Ok so to confirm when you do: test.glycam.org/url/condensed/DAllpa1-4DGlcpa1-4DGlcpa1-4[3DManpa1-3DGalpa1-]<40>OH You see that it's showing json?: image

danwentworthart commented 4 months ago

That is what I see, and know how to fix. Finishing a task prioritization pass, but this will be the first issue when that is complete.

danwentworthart commented 4 months ago

Fixed and distributed, but not deployed. Will be available in the next release cycle. Commit hash: 1faf9cc1d788301bf3f491682a0ae982706acaa1

I think I should leave this open until it is deployed.

danwentworthart commented 1 week ago

I generated this on test.glycam.org. What a cool structure! Closing the ticket. BUGFIX: 155