search

GMOD / Apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
http://genomearchitect.readthedocs.io/
Other
126 stars 85 forks source link

There is an error when I run ./apollo release #1190

Closed wangzhennan14 closed 8 years ago

wangzhennan14 commented 8 years ago

Hi, When I use web apollo, there are so many troubles, now there is an error, can you help me to solve this problem?

:installJBrowse installing jbrowse [git:[url:https://github.com/gmod/jbrowse, tag:1.12.2-apollo, alwaysPull:false, alwaysRecheck:false], plugins:[WebApollo:[included:true], RegexSequenceSearch:[included:true], HideTrackLabels:[included:true]]] Cloning: https://github.com/gmod/jbrowse into jbrowse-download. using bower to install: gmod/jbrowse#1.12.2-apollo /usr/bin/env: ‘node’: No such file or directory :installJBrowse FAILED

FAILURE: Build failed with an exception.

BUILD FAILED

Total time: 8.726 secs

NOTE: Please set the memory for your servlet container (tomcat, jetty, etc.) or Apollo may not start correctly: http://genomearchitect.readthedocs.io/en/latest/Troubleshooting/#tomcat-memory

I think the memory of tomcat is OK.

nathandunn commented 8 years ago

You need to install node.js and use node.js to install bower.

Nathan

On Jul 27, 2016, at 8:23 PM, wangzhennan14 notifications@github.com wrote:

Hi, When I use web apollo, there are so many troubles, now there is an error, can you help me to solve this problem?

:installJBrowse installing jbrowse [git:[url:https://github.com/gmod/jbrowse, tag:1.12.2-apollo, alwaysPull:false, alwaysRecheck:false], plugins:[WebApollo:[included:true], RegexSequenceSearch:[included:true], HideTrackLabels:[included:true]]] Cloning: https://github.com/gmod/jbrowse into jbrowse-download. using bower to install: GMOD/jbrowse#1.12.2-apollo /usr/bin/env: ‘node’: No such file or directory :installJBrowse FAILED

FAILURE: Build failed with an exception.

Where: Build file '/home/wangzhn/Downloads/Apollo/build.gradle' line: 326

What went wrong: Execution failed for task ':installJBrowse'.

Process 'command 'bower'' finished with non-zero exit value 127

Try: Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output.

BUILD FAILED

Total time: 8.726 secs

NOTE: Please set the memory for your servlet container (tomcat, jetty, etc.) or Apollo may not start correctly: http://genomearchitect.readthedocs.io/en/latest/Troubleshooting/#tomcat-memory

I think the memory of tomcat is OK.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or mute the thread.

nathandunn commented 8 years ago

https://nodejs.org/en/download/

npm install -g bower

nathandunn commented 8 years ago

Also, you may wish to use ./apollo deploy to confirm that you can get it to work and then use ./apollo release (which is more experimental) once you have confirmed it is working.