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GMOD / Apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
http://genomearchitect.readthedocs.io/
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projection: adjusting annotator panel losses "selected" attribute #1405

Closed nathandunn closed 7 years ago

nathandunn commented 7 years ago

(minor)

Initially loads selected "used" correctly:

screen shot 2017-01-03 at 12 26 31 pm

Adjusting the frame creates a "redraw" I think, which drops the indicator:

screen shot 2017-01-03 at 12 26 40 pm

Clicking off and on the filter fixes this.

nathandunn commented 7 years ago

The usedSequences somehow goes to 0 and there are no more matches.

Also I get this:

plugin HideTracksButton constructor
VM30842 Browser.js:1906TypeError: Cannot read property 'toLowerCase' of undefined TypeError: Cannot read property 'toLowerCase' of undefined
    at Object.regularizeReferenceName (http://localhost:8080/apollo/24753634519727370841420802568/jbrowse/src/JBrowse/Browser.js:638:22)
    at Object.compareReferenceNames (http://localhost:8080/apollo/24753634519727370841420802568/jbrowse/src/JBrowse/Browser.js:620:17)
    at Object.findReferenceSequence (http://localhost:8080/apollo/24753634519727370841420802568/jbrowse/src/JBrowse/Browser.js:2359:25)
    at Object.callLocation (http://localhost:8080/apollo/24753634519727370841420802568/jbrowse/src/JBrowse/Browser.js:2324:25)
    at http://localhost:8080/apollo/24753634519727370841420802568/jbrowse/src/JBrowse/Browser.js:2306:19
    at http://localhost:8080/apollo/24753634519727370841420802568/jbrowse/src/JBrowse/Browser.js:1904:29
    at signalListener (http://localhost:8080/apollo/24753634519727370841420802568/jbrowse/src/dojo/Deferred.js:37:21)
    at signalWaiting (http://localhost:8080/apollo/24753634519727370841420802568/jbrowse/src/dojo/Deferred.js:28:4)
    at Deferred.resolve (http://localhost:8080/apollo/24753634519727370841420802568/jbrowse/src/dojo/Deferred.js:192:5)
    at Object.<anonymous> (http://localhost:8080/apollo/24753634519727370841420802568/jbrowse/src/JBrowse/Browser.js:967:30) TypeError: Cannot read property 'toLowerCase' of undefined
    at Object.regularizeReferenceName (VM30842 Browser.js:638)
    at Object.compareReferenceNames (VM30842 Browser.js:620)
    at Object.findReferenceSequence (VM30842 Browser.js:2359)
    at Object.callLocation (VM30842 Browser.js:2324)
    at VM30842 Browser.js:2306