Closed nathandunn closed 7 years ago
Just wanted to add this from @cmdcolin . . I think that it still needs to be completed for other track types and tested for annotation and Apollo integration (we should automatically over-ride and flip these tracks), but overall it works well within JBrowse.
@nathandunn thanks. I think that should be possible. Automatically "upgrading" the store types to use projection types should be possible too
The currently implemented ones in the plugin are BAM, BigWig, NCList, Sequence
A remaining store class is the one used for the annotation track on Apollo (that uses a store class called scratchpad)
Updated interfaces @selewis @monicacecilia
This implies that the scaffolds are ordered and the entire scaffold is reversed or not.
It should be noted that a lot of this might already be done.
moved mega-issue to other issues
sequencemoved to #1273edit functionalitymoved to #1280nclist (chunks)moved to #1281re-assess what is getting reverse and how, could be that chunk 1 is using 2's and vice versa . .. maybe chunk values should be reversedcreate integration tests11.4 casemoved to #1270https://trello.com/c/3tMaHPcQ/100-reverse-complement-hard
Please add additional visualizations as you have time.
Related somewhat to #481 . . . .