GMOD / Apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
http://genomearchitect.readthedocs.io/
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FASTA export of CDS sequences is too permissive and includes ncRNAs #833

Closed strumpfe closed 8 years ago

strumpfe commented 8 years ago

Whilst exporting CDS sequences as FASTA from an instance with ncRNA both the protein_coding transcripts and the non-coding ones where written to file. I expect this behaviour for the 'cDNA' export but not the 'CDS' one. Is there a filter for annotation type missing?

nathandunn commented 8 years ago

FYI @deepakunni3 . . for 2.0.3 . . ..

monicacecilia commented 8 years ago

ncRNAs are no longer included in CDS export via FASTA files. 💃