use synteny to view orthologous regions using filterable BLAST hits in order to migrate and review annotations across organisms

GMOD / Apollo3Server

Apollo 3 Server: Grails 4 + Neo4j 3.5 + JB2

BSD 3-Clause "New" or "Revised" License

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Open nathandunn opened 3 years ago

nathandunn commented 3 years ago

will of course have a strong client-side component as well

nathandunn commented 3 years ago

nathandunn commented 3 years ago

nathandunn commented 3 years ago

Current ACT interface:

built using all-to-all blast hits, but uses -m8 tab separated format (we use XML), i.e., blat would also work
clicking on high hits centers both
allows an arbitrary number genomes to view

ExampleAct1

nathandunn commented 3 years ago

Apollo-Ortholog-View