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GMOD / JBrowseR

R interface to the JBrowse 2 Linear Genome View.
https://gmod.github.io/JBrowseR/
Apache License 2.0
35 stars 3 forks source link

using UCSC plugin #17

Closed bayolau closed 1 year ago

bayolau commented 1 year ago

Thank you for your fantastic work!

I wonder if there's a way/example to use the UCSC plugin for jbrowse? https://github.com/cmdcolin/jbrowse-plugin-ucsc-api ? I've tried to modify the js code to pass in plugins, but it seems to have failed out because of a new operation on object.

plugins: [
  {
    "name": "UCSC",
    "url": "https://unpkg.com/jbrowse-plugin-ucsc/dist/jbrowse-plugin-ucsc.umd.production.min.js"
  }
]
cmdcolin commented 1 year ago

@bayolau hi there, I'm not aware of JBrowseR allowing you to add plugins yet

There is an example of using plugins with a plain instance of the jbrowse embedded linear genome view outside of JBrowseR here https://jbrowse.org/storybook/lgv/main/?path=/story/using-plugins--page

might take a little work to add to JBrowseR, cc @elliothershberg

bayolau commented 1 year ago

@cmdcolin thanks! it works!

cmdcolin commented 1 year ago

excellent :) did it work inside of JBrowseR? or just stand alone?