How to edit annot.json in the docker ?

GMOD / docker-apollo

:whale: Apollo 2.X Docker Image

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How to edit annot.json in the docker ? #29

Closed agroppi closed 5 years ago

agroppi commented 5 years ago

I want to add custom tracks (like pfam domains, blast results, etc ...) I have these data in gff format, but for example the type "domain" is not present in the annot.json

perl /home/apollo/jbrowse-master/bin/flatfile-to-json.pl \
> --gff /home/apollo/rawdata/pfam_domains.gff \
> --type domain \
> --trackLabel pfam_domains \
> --out /home/apollo/jbrowse-data
WARNING: No matching features found for domain

Is there a solution ?

Thanks

nathandunn commented 5 years ago

Is this related to: https://github.com/GMOD/Apollo/issues/1948?

If so, close this in favor of that. Thanks.

agroppi commented 5 years ago

Is this related to: GMOD/Apollo#1948?

If so, close this in favor of that. Thanks.

Yes sorry for that. Samme question as https://github.com/GMOD/Apollo/issues/1948