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GMOD / docker-apollo

:whale: Apollo 2.X Docker Image
GNU General Public License v3.0
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missing data folder #5

Closed mictadlo closed 8 years ago

mictadlo commented 8 years ago

Hello, I cloned the docker-apollo project, but I can not do Copy JBrowse folders into ./data, because I do not know which JBrowse folder and ./data is meant in QuickStart.

git clone https://github.com/GMOD/docker-apollo
ls docker-apollo/
Dockerfile      LICENSE         README.md       apollo-config.groovy    build.sh        docker-compose.yml  img

Thank you in advance.

Mic

hexylena commented 8 years ago

Hi @mictadlo

If you wish to mount JBrowse instances within the docker image, there is no specific directory which you must use. You can mount any directory you like (e.g. docker run -itP -v /my/data:/container/data gmod/apollo:latest), and then in the Apollo interface you will specify the path to the JBrowse instances such as /container/data/instance

mictadlo commented 8 years ago

Does this docker container come with JBrowse or do I have to install it?

hexylena commented 8 years ago

The inputs to apollo is the data directory formatted for JBrowse. JBrowse is included as part of apollo, you just need to provide the "data" directory in your mounted volume

nathandunn commented 8 years ago

@mictadlo I'm using the native docker for mac now (beta) and it all seems to be working when I use docker-compose.

nathandunn commented 8 years ago

The version is: 

$docker -v
Docker version 1.12.0, build 8eab29e, experimental
mictadlo commented 8 years ago

It is working.