search

GMOD / jbconnect

JBConnect, an optional server-side component of JBrowse
http://jbconnect.readthedocs.io
Other
1 stars 1 forks source link

raw install not completing #93

Closed enuggetry closed 5 years ago

enuggetry commented 5 years ago

Noticed: JBrowse 1.15.1 failed install demos

Formatting Volvox example data ... failed.  See setup.log file for error messages.

Formatting Yeast example data ... failed.  See setup.log file for error messages.

Noted: plugin injection failed:

processing dataset sample_data/json/volvox
Sample track already exists
verbose: jblast hook loaded successfully.
verbose: Built-in hooks are ready.
error: ** Grunt :: An error occurred. **
error: 
------------------------------------------------------------------------
Plugin: /home/ericiam/jbconnect1/node_modules/@gmod/jbrowse/plugins/JBClient
Plugin: /home/ericiam/jbconnect1/node_modules/@gmod/jbrowse/plugins/ServerSearch
Plugin: /home/ericiam/jbconnect1/node_modules/@gmod/jbrowse/plugins/JBlast
submodule plutins: 1
Adding plugins to dataset sample_data/json/volvox
**** inserting JBClient plugin
Warning: Cannot read property 'push' of undefined 

Aborted due to warnings.
Running "jb-inject-plugins" task
Inject JBConnect client plugins into JBrowse
------------------------------------------------------------------------

error: Looks like a Grunt error occurred--
error: Please fix it, then **restart Sails** to continue running tasks (e.g. watching for changes in assets)
error: Or if you're stuck, check out the troubleshooting tips below.
enuggetry commented 5 years ago

Consideration to update support for later JBrowse version to 1.15.2 or latest. Uncertain where the incompatibility occurs and if we move to the latest JBrowse version, I face dealing with the breakout modules that have evolved. Must familiarize with the evolution as well as understand the nature of the source of the problem. This is a complete solution but may take more time.

Consideration to identify the JBrowse setup problem (missing module or what not), so that setup.sh will complete successfully. -->> study. This might be a quick and preferred workaround.

Consideration for applying a workaround - Since the very little of the volvox demo is actually needed and refseq is preinstalled, the workaround is just to get the demo track installed and plugins configured. This might be a quick workaround.