cmdcolin
commented
3 years ago Similar concept can come up with human with telomeres that go beyond end of start and end of chromosome. the hg19/hg38 have Ns at the start/end that pad it so "show soft clipped reads" can extend into this area but t2t and probably most other de novo assemblies do not use padding
Random idea
May need to add linear genome view features to allow plotting features that wrap around the origin and maybe check that adapters can handle that (generally i think it uses coordinates that go beyond end of chromosome, not negative coordinates) -and/or- make actual circular genome viewer
inspired by metagenomics increasingly uncovering fully circularized genomes https://twitter.com/lh3lh3/status/1450461393224970246