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GMOD / jbrowse-components

Source code for JBrowse 2, a modern React-based genome browser
https://jbrowse.org/jb2
Apache License 2.0
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Show feature sequence for non-gene feature types in feature detail panel #2593

Closed cmdcolin closed 1 year ago

cmdcolin commented 2 years ago

Ported this over from a discussion thread

We could make a way to show the sequence for other feature types

Discussed in https://github.com/GMOD/jbrowse-components/discussions/2514

Originally posted by **marta-coronado** November 12, 2021 Hello! I'm starting with JBrowse2. I've encountered a couple of scenarios that I can't figure it out how to address them. Sorry if my questions are dumb, but I wasn't able to solve them with the guide and I'm still learning :). I've added a track displaying transposable elements annotations from a gff3 file. Is there a way to display the sequence of the transposable element under the feature details panel? (similar to transcript features) JBrowse1 was able to display the "sequence region" but I can't figure out how to do it with JBrowse2. Also, I'd like that when I zoom out and display a large region of a chromosome, to display a feature density histogram for genes/transposable elements annotations, instead of showing the "force load" message. Any help is much appreciated. Thank you very much!
cmdcolin commented 1 year ago

xref https://github.com/GMOD/jbrowse-components/issues/463 for feature density histogram aspect mentioned