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GMOD / jbrowse-components

Source code for JBrowse 2, a modern React-based genome browser
https://jbrowse.org/jb2
Apache License 2.0
206 stars 62 forks source link

open igv "genome server" format as a data hub #316

Open rbuels opened 5 years ago

rbuels commented 5 years ago

see https://software.broadinstitute.org/software/igv/configuring_genome_server for how these go

rbuels commented 5 years ago

these .genome files are actually .zip files that contain cytoBandIdeo.txt, property.txt, and refGene.txt

the ideogram file is in UCSC ideogram format

the refGene.txt is a certain BED schema (@cmdcolin whats the autosql)

property.txt is a java properties file with stuff like image

rbuels commented 5 years ago

http://igv.broadinstitute.org/genomes/genomes.txt is the list of IGV default genomes

rbuels commented 5 years ago

if cytobandFile is missing from properties.txt, there is no ideogram