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GMOD / jbrowse-components

Source code for JBrowse 2, a modern React-based genome browser
https://jbrowse.org/jb2
Apache License 2.0
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Improved feature set compatibility with UCSC trackhubs #4101

Open cmdcolin opened 7 months ago

cmdcolin commented 7 months ago

Some features used in genark/UCSC track hubs

chromAlias.bb (bigbed format refNameAliases) defaultLocation html links bpt file blat server isPcr (in silico pcr) etc.

cmdcolin commented 7 months ago

also, single file trix from the trackhub. the trix from these files are a bit different from our trix. our trix are custom for having locstrings in the .ix file, but ucsc trix requires an extra file lookup from the bigbed search index i believe

cmdcolin commented 7 months ago

multiwiggle tracks parent or composite tracks the composite tracks have somewhat buggy behavior already in our current app

cmdcolin commented 4 months ago

xref https://github.com/GMOD/jbrowse-components/issues/48