search

GMOD / jbrowse-components

Source code for JBrowse 2, a modern React-based genome browser
https://jbrowse.org/jb2
Apache License 2.0
205 stars 61 forks source link

Flaky build failing CI #4139

Closed cmdcolin closed 9 months ago

cmdcolin commented 9 months ago

I have seen this twice today

yarn run v1.22.21
$ yarn useDist && node scripts/build.js && yarn useSrc
$ lerna run useDist --scope "@jbrowse/plugin*" --scope @jbrowse/text-indexing
lerna notice cli v8.0.0
lerna info ci enabled
lerna notice filter including ["@jbrowse/plugin*","@jbrowse/text-indexing"]
lerna info filter [ '@jbrowse/plugin*', '@jbrowse/text-indexing' ]

 >  Lerna (powered by Nx)   Running target useDist for 31 projects:

    - @jbrowse/text-indexing
    - @jbrowse/plugin-alignments
    - @jbrowse/plugin-arc
    - @jbrowse/plugin-authentication
    - @jbrowse/plugin-bed
    - @jbrowse/plugin-breakpoint-split-view
    - @jbrowse/plugin-circular-view
    - @jbrowse/plugin-comparative-adapters
    - @jbrowse/plugin-config
    - @jbrowse/plugin-data-management
    - @jbrowse/plugin-dotplot-view
    - @jbrowse/plugin-gccontent
    - @jbrowse/plugin-gff3
    - @jbrowse/plugin-grid-bookmark
    - @jbrowse/plugin-gtf
    - @jbrowse/plugin-hic
    - @jbrowse/plugin-jobs-management
    - @jbrowse/plugin-legacy-jbrowse
    - @jbrowse/plugin-linear-comparative-view
    - @jbrowse/plugin-linear-genome-view
    - @jbrowse/plugin-lollipop
    - @jbrowse/plugin-menus
    - @jbrowse/plugin-rdf
    - @jbrowse/plugin-sequence
    - @jbrowse/plugin-spreadsheet-view
    - @jbrowse/plugin-sv-inspector
    - @jbrowse/plugin-svg
    - @jbrowse/plugin-text-indexing
    - @jbrowse/plugin-trix
    - @jbrowse/plugin-variants
    - @jbrowse/plugin-wiggle

> @jbrowse/plugin-linear-genome-view:useDist

$ node ../../scripts/useDist.js

> @jbrowse/text-indexing:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-config:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-circular-view:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-bed:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-authentication:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-legacy-jbrowse:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-data-management:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-trix:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-wiggle:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-svg:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-gff3:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-menus:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-alignments:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-sequence:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-arc:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-rdf:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-variants:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-gccontent:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-breakpoint-split-view:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-gtf:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-spreadsheet-view:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-hic:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-lollipop:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-grid-bookmark:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-linear-comparative-view:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-comparative-adapters:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-dotplot-view:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-text-indexing:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-sv-inspector:useDist

$ node ../../scripts/useDist.js

> @jbrowse/plugin-jobs-management:useDist

$ node ../../scripts/useDist.js

 >  Lerna (powered by Nx)   Successfully ran target useDist for 31 projects

$ /home/runner/work/jbrowse-components/jbrowse-components/node_modules/.bin/lerna exec yarn pack --scope @jbrowse/core --scope @jbrowse/text-indexing --scope @jbrowse/cli --scope jbrowse-predefined-sessions
lerna notice cli v8.0.0
lerna info ci enabled
lerna notice filter including ["@jbrowse/core","@jbrowse/text-indexing","@jbrowse/cli","jbrowse-predefined-sessions"]
lerna info filter [
lerna info filter   '@jbrowse/core',
lerna info filter   '@jbrowse/text-indexing',
lerna info filter   '@jbrowse/cli',
lerna info filter   'jbrowse-predefined-sessions'
lerna info filter ]
lerna info Executing command in 4 packages: "yarn pack"
$ yarn build
$ yarn build && yarn useDist
$ npm run clean  && npm run build && npm run manifest && npm run docs
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/products/jbrowse-predefined-sessions/jbrowse-predefined-sessions-v2.9.0.tgz".
$ yarn clean
$ yarn clean

> @jbrowse/cli@2.9.0 clean
> rimraf lib

$ rimraf dist esm *.tsbuildinfo
$ rimraf dist tsconfig.build.tsbuildinfo
$ tsc -b tsconfig.build.json && cp package.json README.md ../../LICENSE dist/
$ npm run build:esm && npm run build:commonjs

> @jbrowse/cli@2.9.0 prebuild
> npm run clean

> @jbrowse/text-indexing@2.9.0 build:esm
> tsc --build tsconfig.build.esm.json

> @jbrowse/cli@2.9.0 clean
> rimraf lib

> @jbrowse/cli@2.9.0 build
> tsc --build

> @jbrowse/cli@2.9.0 manifest
> oclif manifest

wrote manifest to /home/runner/work/jbrowse-components/jbrowse-components/products/jbrowse-cli/oclif.manifest.json

> @jbrowse/cli@2.9.0 predocs
> npm run build

> @jbrowse/cli@2.9.0 prebuild
> npm run clean

> @jbrowse/cli@2.9.0 clean
> rimraf lib

> @jbrowse/cli@2.9.0 build
> tsc --build

> @jbrowse/cli@2.9.0 docs
> npm run docs:create && npm run docs:format

> @jbrowse/cli@2.9.0 docs:create
> oclif readme

replacing <!-- commands --> in README.md

> @jbrowse/cli@2.9.0 docs:format
> prettier --write README.md

README.md 148ms
$ rimraf oclif.manifest.json
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/products/jbrowse-cli/jbrowse-cli-v2.9.0.tgz".
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/packages/core/jbrowse-core-v2.9.0.tgz".

> @jbrowse/text-indexing@2.9.0 build:commonjs
> tsc --build tsconfig.build.commonjs.json

$ node ../../scripts/useDist.js
$ yarn useSrc
$ node ../../scripts/useSrc.js
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/packages/text-indexing/jbrowse-text-indexing-v2.9.0.tgz".
lerna success exec Executed command in 4 packages: "yarn pack"
$ /home/runner/work/jbrowse-components/jbrowse-components/node_modules/.bin/lerna exec yarn pack --scope @jbrowse/product-core --scope @jbrowse/plugin-authentication --scope @jbrowse/plugin-bed --scope @jbrowse/plugin-circular-view --scope @jbrowse/plugin-config --scope @jbrowse/plugin-jobs-management --scope @jbrowse/plugin-legacy-jbrowse --scope @jbrowse/plugin-linear-genome-view --scope @jbrowse/plugin-menus --scope @jbrowse/plugin-rdf --scope @jbrowse/plugin-svg --scope @jbrowse/plugin-text-indexing --scope @jbrowse/plugin-trix
lerna notice cli v8.0.0
lerna info ci enabled
lerna notice filter including ["@jbrowse/product-core","@jbrowse/plugin-authentication","@jbrowse/plugin-bed","@jbrowse/plugin-circular-view","@jbrowse/plugin-config","@jbrowse/plugin-jobs-management","@jbrowse/plugin-legacy-jbrowse","@jbrowse/plugin-linear-genome-view","@jbrowse/plugin-menus","@jbrowse/plugin-rdf","@jbrowse/plugin-svg","@jbrowse/plugin-text-indexing","@jbrowse/plugin-trix"]
lerna info filter [
lerna info filter   '@jbrowse/product-core',
lerna info filter   '@jbrowse/plugin-authentication',
lerna info filter   '@jbrowse/plugin-bed',
lerna info filter   '@jbrowse/plugin-circular-view',
lerna info filter   '@jbrowse/plugin-config',
lerna info filter   '@jbrowse/plugin-jobs-management',
lerna info filter   '@jbrowse/plugin-legacy-jbrowse',
lerna info filter   '@jbrowse/plugin-linear-genome-view',
lerna info filter   '@jbrowse/plugin-menus',
lerna info filter   '@jbrowse/plugin-rdf',
lerna info filter   '@jbrowse/plugin-svg',
lerna info filter   '@jbrowse/plugin-text-indexing',
lerna info filter   '@jbrowse/plugin-trix'
lerna info filter ]
lerna info Executing command in 13 packages: "yarn pack"
$ yarn build && yarn useDist
$ yarn build && yarn useDist
$ yarn build && yarn useDist
$ yarn build && yarn useDist
$ npm run clean
$ yarn clean
$ npm run clean
$ npm run clean
$ rimraf dist esm *.tsbuildinfo

> @jbrowse/plugin-circular-view@2.9.0 clean
> rimraf dist esm *.tsbuildinfo

> @jbrowse/plugin-authentication@2.9.0 clean
> rimraf dist esm *.tsbuildinfo

> @jbrowse/plugin-bed@2.9.0 clean
> rimraf dist esm *.tsbuildinfo

$ npm run build:esm && npm run build:commonjs
$ npm-run-all build:*
$ npm-run-all build:*
$ npm-run-all build:*

> @jbrowse/product-core@2.9.0 build:esm
> tsc --build tsconfig.build.esm.json

$ tsc --build tsconfig.build.esm.json
$ tsc --build tsconfig.build.esm.json
$ tsc --build tsconfig.build.esm.json
$ tsc --build tsconfig.build.commonjs.json
$ tsc --build tsconfig.build.commonjs.json
$ tsc --build tsconfig.build.commonjs.json

> @jbrowse/product-core@2.9.0 build:commonjs
> tsc --build tsconfig.build.commonjs.json

$ node ../../scripts/useDist.js
$ yarn useSrc
$ node ../../scripts/useSrc.js
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/plugins/bed/jbrowse-plugin-bed-v2.9.0.tgz".
$ yarn build && yarn useDist
$ npm run clean

> @jbrowse/plugin-config@2.9.0 clean
> rimraf dist esm *.tsbuildinfo

$ npm-run-all build:*
$ tsc --build tsconfig.build.esm.json
$ node ../../scripts/useDist.js
$ yarn useSrc
$ node ../../scripts/useSrc.js
$ node ../../scripts/useDist.js
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/plugins/authentication/jbrowse-plugin-authentication-v2.9.0.tgz".
$ yarn useSrc
$ yarn build && yarn useDist
$ node ../../scripts/useDist.js
$ node ../../scripts/useSrc.js
$ npm run clean
$ yarn useSrc
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/plugins/circular-view/jbrowse-plugin-circular-view-v2.9.0.tgz".
$ node ../../scripts/useSrc.js
$ yarn build && yarn useDist
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/packages/product-core/jbrowse-product-core-v2.9.0.tgz".

> @jbrowse/plugin-jobs-management@2.9.0 clean
> rimraf dist esm *.tsbuildinfo

$ npm run clean
$ yarn build && yarn useDist
$ npm-run-all build:*
$ npm run clean

> @jbrowse/plugin-legacy-jbrowse@2.9.0 clean
> rimraf dist esm *.tsbuildinfo

$ tsc --build tsconfig.build.esm.json
$ npm-run-all build:*

> @jbrowse/plugin-linear-genome-view@2.9.0 clean
> rimraf dist esm *.tsbuildinfo

$ npm-run-all build:*
$ tsc --build tsconfig.build.esm.json
$ tsc --build tsconfig.build.esm.json
$ tsc --build tsconfig.build.commonjs.json
$ tsc --build tsconfig.build.commonjs.json
$ tsc --build tsconfig.build.commonjs.json
$ node ../../scripts/useDist.js
$ node ../../scripts/useDist.js
$ tsc --build tsconfig.build.commonjs.json
$ yarn useSrc
$ yarn useSrc
$ node ../../scripts/useSrc.js
$ node ../../scripts/useSrc.js
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/plugins/config/jbrowse-plugin-config-v2.9.0.tgz".
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/plugins/legacy-jbrowse/jbrowse-plugin-legacy-jbrowse-v2.9.0.tgz".
$ node ../../scripts/useDist.js
$ yarn build && yarn useDist
$ yarn build && yarn useDist
$ yarn useSrc
$ npm run clean
$ npm run clean
$ node ../../scripts/useSrc.js
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/plugins/jobs-management/jbrowse-plugin-jobs-management-v2.9.0.tgz".
$ yarn build && yarn useDist

> @jbrowse/plugin-menus@2.9.0 clean
> rimraf dist esm *.tsbuildinfo

> @jbrowse/plugin-rdf@2.9.0 clean
> rimraf dist esm *.tsbuildinfo

$ npm-run-all build:*
$ npm-run-all build:*
$ npm run clean
$ tsc --build tsconfig.build.esm.json
$ tsc --build tsconfig.build.esm.json

> @jbrowse/plugin-svg@2.9.0 clean
> rimraf dist esm *.tsbuildinfo

$ npm-run-all build:*
$ tsc --build tsconfig.build.esm.json
$ tsc --build tsconfig.build.commonjs.json
$ tsc --build tsconfig.build.commonjs.json
$ tsc --build tsconfig.build.commonjs.json
$ node ../../scripts/useDist.js
$ yarn useSrc
$ node ../../scripts/useSrc.js
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/plugins/linear-genome-view/jbrowse-plugin-linear-genome-view-v2.9.0.tgz".
$ yarn build && yarn useDist
$ npm run clean
$ node ../../scripts/useDist.js
$ yarn useSrc

> @jbrowse/plugin-text-indexing@2.9.0 clean
> rimraf dist esm *.tsbuildinfo

$ npm-run-all build:*
$ node ../../scripts/useSrc.js
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/plugins/rdf/jbrowse-plugin-rdf-v2.9.0.tgz".

#
# Fatal error in , line 0
# unreachable code
#
#
#
#FailureMessage Object: 0x7ffebaf7be10
 1: 0xd17f41  [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
 2: 0x20fe211 V8_Fatal(char const*, ...) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
 3: 0x153a014 int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHandle<v8::internal::Isolate> >(unsigned char, v8::internal::SlotAccessorForHandle<v8::internal::Isolate>) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
 4: 0x153a20f v8::internal::Deserializer<v8::internal::Isolate>::ReadObject() [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
 5: 0x1539556 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
 6: 0x1539909 int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHandle<v8::internal::Isolate> >(unsigned char, v8::internal::SlotAccessorForHandle<v8::internal::Isolate>) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
 7: 0x153a20f v8::internal::Deserializer<v8::internal::Isolate>::ReadObject() [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
 8: 0x1539556 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
 9: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
10: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
11: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
12: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
13: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
14: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
15: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
16: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
17: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
18: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
19: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
20: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
21: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
22: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
23: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
24: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
25: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
26: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
27: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
28: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
29: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
30: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
31: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
32: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
33: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
34: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
35: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
36: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
37: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
38: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
39: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
40: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
41: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
42: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
43: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
44: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
45: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
46: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
47: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
48: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
49: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
50: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
51: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
52: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
53: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
54: 0x153822b int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHeapObject>(unsigned char, v8::internal::SlotAccessorForHeapObject) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
55: 0x1539361 v8::internal::Deserializer<v8::internal::Isolate>::ReadData(v8::internal::Handle<v8::internal::HeapObject>, int, int) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
56: 0x1539628 v8::internal::Deserializer<v8::internal::Isolate>::ReadObject(v8::internal::SnapshotSpace) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
57: 0x1539909 int v8::internal::Deserializer<v8::internal::Isolate>::ReadSingleBytecodeData<v8::internal::SlotAccessorForHandle<v8::internal::Isolate> >(unsigned char, v8::internal::SlotAccessorForHandle<v8::internal::Isolate>) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
58: 0x153a20f v8::internal::Deserializer<v8::internal::Isolate>::ReadObject() [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
59: 0x153eda2 v8::internal::ObjectDeserializer::Deserialize() [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
60: 0x153efb4 v8::internal::ObjectDeserializer::DeserializeSharedFunctionInfo(v8::internal::Isolate*, v8::internal::SerializedCodeData const*, v8::internal::Handle<v8::internal::String>) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
61: 0x1531cf2 v8::internal::CodeSerializer::Deserialize(v8::internal::Isolate*, v8::internal::AlignedCachedData*, v8::internal::Handle<v8::internal::String>, v8::ScriptOriginOptions, v8::internal::MaybeHandle<v8::internal::Script>) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
62: 0xf8bd6b  [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
63: 0xf8c04d v8::internal::Compiler::GetSharedFunctionInfoForScriptWithCachedData(v8::internal::Isolate*, v8::internal::Handle<v8::internal::String>, v8::internal::ScriptDetails const&, v8::internal::AlignedCachedData*, v8::ScriptCompiler::CompileOptions, v8::ScriptCompiler::NoCacheReason, v8::internal::NativesFlag) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
64: 0xeebdcc  [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
65: 0xeebed8 v8::ScriptCompiler::CompileUnboundScript(v8::Isolate*, v8::ScriptCompiler::Source*, v8::ScriptCompiler::CompileOptions, v8::ScriptCompiler::NoCacheReason) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
66: 0xc8c3fe node::contextify::ContextifyScript::New(v8::FunctionCallbackInfo<v8::Value> const&) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
67: 0xf29f4f v8::internal::FunctionCallbackArguments::Call(v8::internal::CallHandlerInfo) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
68: 0xf2a505  [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
69: 0xf2ac23 v8::internal::Builtin_HandleApiCall(int, unsigned long*, v8::internal::Isolate*) [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
70: 0x1934df6  [/opt/hostedtoolcache/node/20.10.0/x64/bin/node]
$ tsc --build tsconfig.build.esm.json
$ node ../../scripts/useDist.js
$ yarn useSrc
$ node ../../scripts/useSrc.js
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/plugins/svg/jbrowse-plugin-svg-v2.9.0.tgz".
$ node ../../scripts/useDist.js
Trace/breakpoint trap (core dumped)
$ yarn useSrc
$ node ../../scripts/useSrc.js
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/plugins/menus/jbrowse-plugin-menus-v2.9.0.tgz".
$ tsc --build tsconfig.build.commonjs.json
$ node ../../scripts/useDist.js
$ yarn useSrc
$ node ../../scripts/useSrc.js
success Wrote tarball to "/home/runner/work/jbrowse-components/jbrowse-components/plugins/text-indexing/jbrowse-plugin-text-indexing-v2.9.0.tgz".
lerna ERR! yarn pack exited 133 in '@jbrowse/plugin-trix'
lerna ERR! yarn pack exited 133 in '@jbrowse/plugin-trix'
error Command failed with exit code 133.
info Visit https://yarnpkg.com/en/docs/cli/run for documentation about this command.
error Command failed with exit code 133.
info Visit https://yarnpkg.com/en/docs/cli/run for documentation about this command.
cmdcolin commented 9 months ago

it is hard to tell which command is running when it fails. at the bottom it claims

"lerna ERR! yarn pack exited 133 in '@jbrowse/plugin-trix'"

could be that we are hitting memory limits of the github action. the machines gives us 7GB RAM https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners/about-github-hosted-runners#supported-runners-and-hardware-resources

cmdcolin commented 9 months ago

maybe can close unless it pops up again