cmdcolin
commented
2 months ago example of a potential before and after
{
"session": {
"drawerPosition": "right",
"drawerWidth": 384,
"widgets": {
"hierarchicalTrackSelector": {
"id": "hierarchicalTrackSelector",
"type": "HierarchicalTrackSelectorWidget",
"view": "integration_test",
"faceted": {
"filterText": "",
"showSparse": false,
"showFilters": true,
"showOptions": false,
"panelWidth": 400
}
},
"GridBookmark": {
"id": "GridBookmark",
"type": "GridBookmarkWidget"
}
},
"activeWidgets": {
"hierarchicalTrackSelector": "hierarchicalTrackSelector"
},
"minimized": false,
"id": "X2pTznil7TtrhV4z1r75O",
"name": "Integration test example 7/30/2024, 9:58:25 AM",
"margin": 0,
"views": [
{
"id": "integration_test",
"minimized": false,
"type": "LinearGenomeView",
"offsetPx": 2000,
"bpPerPx": 0.05,
"displayedRegions": [
{
"refName": "ctgA",
"start": 0,
"end": 50001,
"assemblyName": "volvox"
}
],
"tracks": [
{
"id": "ZfLTDGAGgASvA7MNwZe-R",
"type": "AlignmentsTrack",
"configuration": "volvox-long-reads-sv-cram",
"minimized": false,
"displays": [
{
"id": "td2O2UMdbdkKFdlhNQF66",
"type": "LinearAlignmentsDisplay",
"PileupDisplay": {
"id": "KLfnmVzVvgs9qtaRcw7bv",
"type": "LinearPileupDisplay",
"heightPreConfig": 205,
"configuration": {
"type": "LinearPileupDisplay",
"displayId": "volvox-long-reads-sv-cram-LinearAlignmentsDisplay_LinearPileupDisplay_xyz"
},
"filterBy": {
"flagInclude": 0,
"flagExclude": 1540
},
"jexlFilters": [],
"showSoftClipping": false
},
"SNPCoverageDisplay": {
"id": "EvLGqRbKK7L8_CIR6hCX_",
"type": "LinearSNPCoverageDisplay",
"heightPreConfig": 45,
"configuration": {
"type": "LinearSNPCoverageDisplay",
"displayId": "volvox-long-reads-sv-cram-LinearAlignmentsDisplay_snpcoverage_xyz"
},
"selectedRendering": "",
"resolution": 1,
"constraints": {},
"filterBy": {
"flagInclude": 0,
"flagExclude": 1540
},
"jexlFilters": []
},
"snpCovHeight": 45,
"configuration": "volvox-long-reads-sv-cram-LinearAlignmentsDisplay",
"lowerPanelType": "LinearPileupDisplay"
}
]
}
],
"hideHeader": false,
"hideHeaderOverview": false,
"hideNoTracksActive": false,
"trackSelectorType": "hierarchical",
"showCenterLine": false,
"showCytobandsSetting": true,
"trackLabels": "offset",
"showGridlines": true,
"highlight": [],
"colorByCDS": false,
"showTrackOutlines": true,
"showBookmarkHighlights": true,
"showBookmarkLabels": true
}
],
"sessionTracks": [],
"sessionAssemblies": [],
"temporaryAssemblies": [],
"connectionInstances": [],
"sessionConnections": [],
"focusedViewId": "integration_test",
"sessionPlugins": []
}
}after
{
"session": {
"widgets": {
"hierarchicalTrackSelector": {
"id": "hierarchicalTrackSelector",
"type": "HierarchicalTrackSelectorWidget",
"view": "integration_test"
},
},
"activeWidgets": {
"hierarchicalTrackSelector": "hierarchicalTrackSelector"
},
"id": "X2pTznil7TtrhV4z1r75O",
"name": "Integration test example 7/30/2024, 9:58:25 AM",
"views": [
{
"id": "integration_test",
"type": "LinearGenomeView",
"offsetPx": 2000,
"bpPerPx": 0.05,
"displayedRegions": [
{
"refName": "ctgA",
"start": 0,
"end": 50001,
"assemblyName": "volvox"
}
],
"tracks": [
{
"id": "ZfLTDGAGgASvA7MNwZe-R",
"type": "AlignmentsTrack",
"configuration": "volvox-long-reads-sv-cram",
"displays": [
{
"id": "td2O2UMdbdkKFdlhNQF66",
"type": "LinearAlignmentsDisplay",
"PileupDisplay": {
"id": "KLfnmVzVvgs9qtaRcw7bv",
"type": "LinearPileupDisplay",
"configuration": {
"type": "LinearPileupDisplay",
"displayId": "volvox-long-reads-sv-cram-LinearAlignmentsDisplay_LinearPileupDisplay_xyz"
},
},
"SNPCoverageDisplay": {
"id": "EvLGqRbKK7L8_CIR6hCX_",
"type": "LinearSNPCoverageDisplay",
"configuration": {
"type": "LinearSNPCoverageDisplay",
"displayId": "volvox-long-reads-sv-cram-LinearAlignmentsDisplay_snpcoverage_xyz"
},
},
"configuration": "volvox-long-reads-sv-cram-LinearAlignmentsDisplay",
"lowerPanelType": "LinearPileupDisplay"
}
]
}
]
}
],
"focusedViewId": "integration_test"
}
}potentially the after could be simplified even further but that would be a good start
this could be a large-ish task but session snapshots tend to be kind of bloated with a lot of default values being included. config snapshots specifically have logic to remove these. it uses the fact that config slots have a defaultValue to compare to. with session/view/track/display model snapshots, this logic for removing might be more "bespoke"