Closed cmdcolin closed 2 months ago
this allows fetching plaintext FASTA files from remote resources. this allows e.g. fetching a .fasta file without a .fai file from a remote resource
an example of this is for a protein FASTA browser from UniProt
the below screenshot can be generated by fetching https://rest.uniprot.org/uniprotkb/P05067.fasta and https://rest.uniprot.org/uniprotkb/P05067.gff on the fly with no indexing (different tracks are the same gff, with repeated jexlFilters applied)
note that this is not wired up to guessAdapter or add-assembly as it's sort of a niche usage...could be added though if we feel it helps
this allows fetching plaintext FASTA files from remote resources. this allows e.g. fetching a .fasta file without a .fai file from a remote resource
an example of this is for a protein FASTA browser from UniProt
the below screenshot can be generated by fetching https://rest.uniprot.org/uniprotkb/P05067.fasta and https://rest.uniprot.org/uniprotkb/P05067.gff on the fly with no indexing (different tracks are the same gff, with repeated jexlFilters applied)