This PR adds some specialized features to breakpoint split view, particularly:
adds ability to launch a "single row" breakpoint split view, that just shows the two ends of an SV. This can be more 'intuitive' for a DEL or INV. it is an alternative to the "paired arc" type display that exists
ports "pair orientation" coloring from the arc renderer to the breakpoint split view. this allows visualizing INVs better in a breakpoint split view
changes pair-orientation-and-insert-size-coloring for the arc display to prioritize orientation over insert size
creates @jbrowse/sv-core package to try to share some code that was being duplicated surrounding launching breakpoint split views that was unclear if they it exist in plugins/variants, plugins/alignments, plugins/breakpoint-split-view, etc.
better BEDPE support for the breakpoint split view
This PR adds some specialized features to breakpoint split view, particularly:
example screenshot