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GMOD / jbrowse-components

Source code for JBrowse 2, a modern React-based genome browser
https://jbrowse.org/jb2
Apache License 2.0
202 stars 61 forks source link

Create alignment viewer #457

Closed cmdcolin closed 4 years ago

cmdcolin commented 5 years ago

I think it would be very useful to create an "alignment viewer" that compares an alignment versus a reference which can show insertions /deletions/matches/mismatches

This can be seen as in some ways similar to synteny in some ways, as a genome-to-genome is basically a large scale alignment, but a large scale genome-to-genome will probably be broken up into multiple alignments that get chained together (small scale example of MT-human vs MT-orang in minimap2 docs is a single alignment and can output SAM)

cmdcolin commented 5 years ago

Options include just tackling this head on as a synteny viewer or making a smaller scale component that is just designed for this purpose

cmdcolin commented 4 years ago

Closed for #572

cmdcolin commented 4 years ago

forgot to close for #572 as previously noted ^_^