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GMOD / jbrowse-components

Source code for JBrowse 2, a modern React-based genome browser
https://jbrowse.org/jb2
Apache License 2.0
208 stars 62 forks source link

color reference sequences in the circular view #620

Closed rbuels closed 4 years ago

rbuels commented 5 years ago

Make some kind of default coloring for chromosomes in the circular view. Just looks prettier.

garrettjstevens commented 5 years ago

From the circos source:

# Default UCSC color scheme for chromosome colors. 

chr1  = 153,102,0
chr2  = 102,102,0
chr3  = 153,153,30
chr4  = 204,0,0
chr5  = 255,0,0
chr6  = 255,0,204
chr7  = 255,204,204
chr8  = 255,153,0
chr9  = 255,204,0
chr10 = 255,255,0
chr11 = 204,255,0
chr12 = 0,255,0
chr13 = 53,128,0
chr14 = 0,0,204
chr15 = 102,153,255
chr16 = 153,204,255
chr17 = 0,255,255
chr18 = 204,255,255
chr19 = 153,0,204
chr20 = 204,51,255
chr21 = 204,153,255
chr22 = 102,102,102
chr23 = 153,153,153
chrX  = 153,153,153
chr24 = 204,204,204
chrY  = 204,204,204
chrM  = 204,204,153
chr0  = 204,204,153
chrUn = 121,204,61
chrNA = 255,255,255
rbuels commented 5 years ago

I wonder if "characteristic colors" should be part of the assembly info

cmdcolin commented 4 years ago

Note that as far as coloring the lines in the circos view, it's kind of ambiguous because it's bidirectional?

rbuels commented 4 years ago

moving this up in the priorities because @ihh wants it for ITCR in a couple weeks if possible