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GMOD / jbrowse-components

Source code for JBrowse 2, a modern React-based genome browser
https://jbrowse.org/jb2
Apache License 2.0
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Get MCScan data loaded for synteny view #738

Closed cmdcolin closed 4 years ago

cmdcolin commented 4 years ago

The data format is

anchors

grape   peach   score
grape   peach   score
grape   peach   score
grape   peach   score
###
grape   peach   score
grape   peach   score
grape   peach   score
grape   peach   score
###
...

there is another anchors.simple format containing 

grape_start grape_end peach_start peach_end ...
grape_start grape_end peach_start peach_end ...

this collapses all the anchor blocks to a start & end gene

This needs to be collected and rendered against the source file's gff to get chromosome coordinates. there are also coordinate agnostic plots just based on gene rank too

cmdcolin commented 4 years ago

I finished this and it's folded into #54