GMOD / jbrowse-components

Source code for JBrowse 2, a modern React-based genome browser
https://jbrowse.org/jb2
Apache License 2.0
205 stars 62 forks source link

SV inspector better support for deletions, SNPs, insertions, CNVs, tandem duplications #836

Open rbuels opened 4 years ago

rbuels commented 4 years ago

depends on #795

Job one, we should probably just rename it to a variant inspector if we are going to support SNPs and such.

deletions

SNPs

insertions

CNVs

tandem duplications

cmdcolin commented 3 years ago

One option is to launch the breakpoint split view, but with just a single LGV (single row) with two long distance regions open

This will be a compromise that will allow us to see evidence spanning long regions but not have to implement things like #80 and linked-supp alignments/linked paired end reads

I think both side by side and vertical options would be valuable in a number of contexts