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GMOD / jbrowse-plugin-msaview

multiple sequence alignment browser plugin for JBrowse 2
Apache License 2.0
4 stars 0 forks source link

e is not a constructor #24

Closed SaiReddy-A closed 3 years ago

SaiReddy-A commented 3 years ago

Hi, I was trying to develop and integrate this plugin in our jbrowse2 but I'm not sure if I'm doing something wrong or there's an issue with this plugin. I would really appreciate it if you could help me. So, basically this is what I've done. ... git clone https://github.com/GMOD/jbrowse-plugin-msaview.git cd jbrowse-plugin-msaview yarn yarn start ... it started serving on http://localhost:9000 Whereas our jbrowse web was running on http://206.XX.XX.XX:5000/ So, I opened jbrowse web to http://206.XX.XX.XX:5000/?config=http://localhost:9000/config.json

I got the following error

jb2

Thank you for your help!! Sai

cmdcolin commented 3 years ago

Hi there :)

Do you have info about which jbrowse 2 version you are using? I think I can reproduce the error for example if I change my demo link to

https://s3.amazonaws.com/jbrowse.org/code/jb2/v1.0.3/index.html?config=https://unpkg.com/jbrowse-plugin-msaview/dist/config.json&session=share-BVmmEYAoAv&password=SuQaN

But v1.0.4, and v1.1.0 (latest) should work

https://s3.amazonaws.com/jbrowse.org/code/jb2/v1.0.4/index.html?config=https://unpkg.com/jbrowse-plugin-msaview/dist/config.json&session=share-BVmmEYAoAv&password=SuQaN

https://s3.amazonaws.com/jbrowse.org/code/jb2/v1.1.0/index.html?config=https://unpkg.com/jbrowse-plugin-msaview/dist/config.json&session=share-BVmmEYAoAv&password=SuQaN

This is definitely a very new plugin area and it builds off the modularized component here https://github.com/GMOD/react-msaview

It doesn't have a ton of actual integration with jbrowse 2 itself currently (so on some level, at least at the moment, there is not a ton of value for it being run inside of jbrowse 2) but I want to make features like clicking on gene annotation->launches a MSA for that gene and related species

SaiReddy-A commented 3 years ago

Hi, I'm using version 1.0.3 and I see that you are getting the same error with 1.0.3. I guess I'll have to update my jbrowse instance and see if it works. You guys are doing an amazing work and It's really exciting to know there'll be more features.

Thank you!!