Dowloading protein sequence

GMOD / jbrowse

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

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Dowloading protein sequence #1398

Closed anabc29 closed 5 years ago

anabc29 commented 5 years ago

Hi. I am using JBrowse and I would like to know that Is it possible to download Amino Acid sequences? These are the default parameters Captura de pantalla de 2019-07-03 14-20-17

I can download mRNA and CDS but It is so much work to translate the sequences into protein?

Is there a config or parameter to do that? Thanks

cmdcolin commented 5 years ago

This is commonly done using a plugin like this which does extra work on top of the default jbrowse feature details

https://github.com/twsaari/FeatureSequence

cmdcolin commented 5 years ago

Maybe close for now :) saw the other thread was sort of related