search

GMOD / jbrowse

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
http://jbrowse.org
Other
460 stars 199 forks source link

cytoband/ideogram tracks #224

Open rbuels opened 11 years ago

rbuels commented 11 years ago
  1. Make a cytoband data store class that can download and parse (just in memory) a cytoband file, and emit features from it. It's basically a dialect of BED. The features produced should have the same tags as those produced by loading a cytoband GFF like that described on http://search.cpan.org/~lds/Bio-Graphics-2.33/lib/Bio/Graphics/Glyph/ideogram.pm into an NCList.
  2. Make a FeatureGlyph that draws the bands as colored regions.

cytoband file format: http://www.broadinstitute.org/igv/Cytoband

cmdcolin commented 9 years ago

I cherry picked the cytoband branch by @Erik-J-D to try to get it up to date. Latest code is on https://github.com/GMOD/jbrowse/tree/cytoband2

screenshot-localhost 2014-11-04 03-35-08